miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24548 5' -59.7 NC_005264.1 + 67378 0.66 0.766919
Target:  5'- --cGCGCUcgCUGCGCccgccGGCGCgGUa- -3'
miRNA:   3'- acaCGCGGaaGACGCG-----CCGCGgCAag -5'
24548 5' -59.7 NC_005264.1 + 133718 0.66 0.766919
Target:  5'- gGUGCuGCC-UCUGgccgacagcccuUGCGGCGCUGg-- -3'
miRNA:   3'- aCACG-CGGaAGAC------------GCGCCGCGGCaag -5'
24548 5' -59.7 NC_005264.1 + 24174 0.66 0.76321
Target:  5'- cUGcUGCgGCCgcggucgguaaagUCUgGCGCGGUGCCGg-- -3'
miRNA:   3'- -AC-ACG-CGGa------------AGA-CGCGCCGCGGCaag -5'
24548 5' -59.7 NC_005264.1 + 141330 0.66 0.757611
Target:  5'- -cUGCGCCcaCUGCgacgGCGGUGCCcacgUCa -3'
miRNA:   3'- acACGCGGaaGACG----CGCCGCGGca--AG- -5'
24548 5' -59.7 NC_005264.1 + 57966 0.66 0.756675
Target:  5'- -uUGUGCCUaucgucaucggagUCcccGCGCGGCGgCCGUg- -3'
miRNA:   3'- acACGCGGA-------------AGa--CGCGCCGC-GGCAag -5'
24548 5' -59.7 NC_005264.1 + 129561 0.66 0.748197
Target:  5'- gUGcgGCGCCgcccUCagggGCGCGGauCGCgCGUUCg -3'
miRNA:   3'- -ACa-CGCGGa---AGa---CGCGCC--GCG-GCAAG- -5'
24548 5' -59.7 NC_005264.1 + 152492 0.66 0.748197
Target:  5'- gUGcgGCGCCgcccUCagggGCGCGGauCGCgCGUUCg -3'
miRNA:   3'- -ACa-CGCGGa---AGa---CGCGCC--GCG-GCAAG- -5'
24548 5' -59.7 NC_005264.1 + 155782 0.66 0.738684
Target:  5'- --gGCGCCg---GC-CGGCGCCGUc- -3'
miRNA:   3'- acaCGCGGaagaCGcGCCGCGGCAag -5'
24548 5' -59.7 NC_005264.1 + 126270 0.66 0.738684
Target:  5'- --gGCGCCg---GC-CGGCGCCGUc- -3'
miRNA:   3'- acaCGCGGaagaCGcGCCGCGGCAag -5'
24548 5' -59.7 NC_005264.1 + 112976 0.66 0.738684
Target:  5'- --cGCGUauacgCUGCGCGGCGUCa--- -3'
miRNA:   3'- acaCGCGgaa--GACGCGCCGCGGcaag -5'
24548 5' -59.7 NC_005264.1 + 126093 0.66 0.738684
Target:  5'- --gGCGCCg---GC-CGGCGCCGUc- -3'
miRNA:   3'- acaCGCGGaagaCGcGCCGCGGCAag -5'
24548 5' -59.7 NC_005264.1 + 155960 0.66 0.738684
Target:  5'- --gGCGCCg---GC-CGGCGCCGUc- -3'
miRNA:   3'- acaCGCGGaagaCGcGCCGCGGCAag -5'
24548 5' -59.7 NC_005264.1 + 75214 0.66 0.729083
Target:  5'- --cGCGgCUgcaucggccCUGCGCGGCgGCCGUc- -3'
miRNA:   3'- acaCGCgGAa--------GACGCGCCG-CGGCAag -5'
24548 5' -59.7 NC_005264.1 + 19908 0.66 0.729083
Target:  5'- --gGUGCUUUgUG-GUGGCGCCGUg- -3'
miRNA:   3'- acaCGCGGAAgACgCGCCGCGGCAag -5'
24548 5' -59.7 NC_005264.1 + 123818 0.67 0.7194
Target:  5'- --cGCGCCUacgCcGcCGCGGCGCUGg-- -3'
miRNA:   3'- acaCGCGGAa--GaC-GCGCCGCGGCaag -5'
24548 5' -59.7 NC_005264.1 + 158235 0.67 0.7194
Target:  5'- --cGCGCCUacgCcGcCGCGGCGCUGg-- -3'
miRNA:   3'- acaCGCGGAa--GaC-GCGCCGCGGCaag -5'
24548 5' -59.7 NC_005264.1 + 129747 0.67 0.709647
Target:  5'- --cGCGCCc-CUGaggGCGGCGCCGc-- -3'
miRNA:   3'- acaCGCGGaaGACg--CGCCGCGGCaag -5'
24548 5' -59.7 NC_005264.1 + 31318 0.67 0.709647
Target:  5'- cGUGgGCC---UGCGCGGCGuuGc-- -3'
miRNA:   3'- aCACgCGGaagACGCGCCGCggCaag -5'
24548 5' -59.7 NC_005264.1 + 152306 0.67 0.709647
Target:  5'- --cGCGCCc-CUGaggGCGGCGCCGc-- -3'
miRNA:   3'- acaCGCGGaaGACg--CGCCGCGGCaag -5'
24548 5' -59.7 NC_005264.1 + 25526 0.67 0.69983
Target:  5'- --aGCauGUCUUCUGCGaugGGUGCCGUa- -3'
miRNA:   3'- acaCG--CGGAAGACGCg--CCGCGGCAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.