miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 5' -53.8 NC_005264.1 + 52952 0.67 0.957133
Target:  5'- gCGGCGCaUUGCGCcgcgGGGUauuccgcucuguccaCUAgCUCGCg -3'
miRNA:   3'- -GCUGCGaAGCGCG----UCCA---------------GAUaGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 7143 0.67 0.95561
Target:  5'- cCGACGaaacguggUCGCGgcCAGGUCcAUC-CGCg -3'
miRNA:   3'- -GCUGCga------AGCGC--GUCCAGaUAGaGCG- -5'
24575 5' -53.8 NC_005264.1 + 57777 0.67 0.95561
Target:  5'- ---gGCUUCGCGUc-GUCUAgcucCUCGCg -3'
miRNA:   3'- gcugCGAAGCGCGucCAGAUa---GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 116412 0.67 0.95561
Target:  5'- cCGACGUcgaGCGCAGGgcggCgugcagcCUCGCg -3'
miRNA:   3'- -GCUGCGaagCGCGUCCa---Gaua----GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 126170 0.67 0.95561
Target:  5'- cCGACGaaacguggUCGCGgcCAGGUCcAUC-CGCg -3'
miRNA:   3'- -GCUGCga------AGCGC--GUCCAGaUAGaGCG- -5'
24575 5' -53.8 NC_005264.1 + 9476 0.67 0.95561
Target:  5'- -aACGCUUCGCGC--GUCUuGUCUgcCGCc -3'
miRNA:   3'- gcUGCGAAGCGCGucCAGA-UAGA--GCG- -5'
24575 5' -53.8 NC_005264.1 + 7888 0.67 0.943007
Target:  5'- aGAUGCggCGuCGgAGGUCUc-CUCGCc -3'
miRNA:   3'- gCUGCGaaGC-GCgUCCAGAuaGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 126914 0.67 0.943007
Target:  5'- aGAUGCggCGuCGgAGGUCUc-CUCGCc -3'
miRNA:   3'- gCUGCGaaGC-GCgUCCAGAuaGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 26991 0.68 0.938336
Target:  5'- uGACGUggCaCGCGGGUagccauUCUCGCu -3'
miRNA:   3'- gCUGCGaaGcGCGUCCAgau---AGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 100723 0.68 0.938336
Target:  5'- aCGugGCUcuggagaggGCGCuGGUCgagCUCGCc -3'
miRNA:   3'- -GCugCGAag-------CGCGuCCAGauaGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 91064 0.68 0.938336
Target:  5'- aGGCGCUUCuGCaacggcgccaGCAGGUCggcuaGUCguaaCGCg -3'
miRNA:   3'- gCUGCGAAG-CG----------CGUCCAGa----UAGa---GCG- -5'
24575 5' -53.8 NC_005264.1 + 129389 0.68 0.937374
Target:  5'- cCGugGCgggaauuaauagUCaGCGCggGGGUUUAUuCUCGCg -3'
miRNA:   3'- -GCugCGa-----------AG-CGCG--UCCAGAUA-GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 100526 0.68 0.937374
Target:  5'- aGACGaca-GgGCGGGUCUAguccggacgacgCUCGCg -3'
miRNA:   3'- gCUGCgaagCgCGUCCAGAUa-----------GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 20262 0.68 0.928279
Target:  5'- gCGGCGCggccUCGCGgAGGggaCcGUCUgCGCg -3'
miRNA:   3'- -GCUGCGa---AGCGCgUCCa--GaUAGA-GCG- -5'
24575 5' -53.8 NC_005264.1 + 94718 0.68 0.928279
Target:  5'- aCGGCGCccaUGCGUuuuGUCUuuuGUCUCGCa -3'
miRNA:   3'- -GCUGCGaa-GCGCGuc-CAGA---UAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 51085 0.68 0.92289
Target:  5'- aGACcuGCUUCGCggucgccgguGCugcGGUCUG-CUCGCg -3'
miRNA:   3'- gCUG--CGAAGCG----------CGu--CCAGAUaGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 82217 0.68 0.92289
Target:  5'- gCGGCGCcagcaUCGCGUAGaGU--GUCUCGUu -3'
miRNA:   3'- -GCUGCGa----AGCGCGUC-CAgaUAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 76102 0.68 0.92289
Target:  5'- gGGCGCgaacaGCGCggcaucagaggGGGUCUgcagAUCUUGCg -3'
miRNA:   3'- gCUGCGaag--CGCG-----------UCCAGA----UAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 65370 0.68 0.917262
Target:  5'- uGACGC--CGC-CGGGUagaGUCUCGCa -3'
miRNA:   3'- gCUGCGaaGCGcGUCCAga-UAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 75820 0.68 0.911394
Target:  5'- aGGCGC---GCGguGGUCUAUgUUGUg -3'
miRNA:   3'- gCUGCGaagCGCguCCAGAUAgAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.