miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24600 3' -59.9 NC_005264.1 + 54127 1.1 0.001083
Target:  5'- aUGGAGUUGGCGCUGCCCACCACCGACg -3'
miRNA:   3'- -ACCUCAACCGCGACGGGUGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 67883 0.8 0.12546
Target:  5'- gGGAaugGGcCGCgagGCCCACCACCGACg -3'
miRNA:   3'- aCCUcaaCC-GCGa--CGGGUGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 54427 0.76 0.24387
Target:  5'- -cGAGUucgcgaacaugcUGGCGCgggggaUGCCCACCGCCGAg -3'
miRNA:   3'- acCUCA------------ACCGCG------ACGGGUGGUGGCUg -5'
24600 3' -59.9 NC_005264.1 + 138244 0.75 0.274065
Target:  5'- cGGAGUagaGGCGCUGUuggucaCCAUCGCCGAg -3'
miRNA:   3'- aCCUCAa--CCGCGACG------GGUGGUGGCUg -5'
24600 3' -59.9 NC_005264.1 + 108508 0.74 0.307183
Target:  5'- gUGGGGUacGGCGUcgUGCgCCACCACCGugGCa -3'
miRNA:   3'- -ACCUCAa-CCGCG--ACG-GGUGGUGGC--UG- -5'
24600 3' -59.9 NC_005264.1 + 162191 0.73 0.335819
Target:  5'- aGGGGggGGCGCgugaGCCUcuaucgcgcuGCCugCGACg -3'
miRNA:   3'- aCCUCaaCCGCGa---CGGG----------UGGugGCUG- -5'
24600 3' -59.9 NC_005264.1 + 43164 0.73 0.335819
Target:  5'- aGGGGggGGCGCgugaGCCUcuaucgcgcuGCCugCGACg -3'
miRNA:   3'- aCCUCaaCCGCGa---CGGG----------UGGugGCUG- -5'
24600 3' -59.9 NC_005264.1 + 153090 0.73 0.366355
Target:  5'- gGGAGcacGGCgGCuUGCCUGCCGCCGAg -3'
miRNA:   3'- aCCUCaa-CCG-CG-ACGGGUGGUGGCUg -5'
24600 3' -59.9 NC_005264.1 + 138613 0.72 0.412214
Target:  5'- cGGAGUgucuuacuaucccGGCGCgcugGCUUcgGCCACCGGCa -3'
miRNA:   3'- aCCUCAa------------CCGCGa---CGGG--UGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 69404 0.71 0.441731
Target:  5'- gGcGGGUaGGCGC-GCCUGCCGCCGuCg -3'
miRNA:   3'- aC-CUCAaCCGCGaCGGGUGGUGGCuG- -5'
24600 3' -59.9 NC_005264.1 + 3750 0.71 0.448849
Target:  5'- cGGGGccucuugccgccggGGCGCUGCgggcccuuggucgaCCGCCGCCGAUc -3'
miRNA:   3'- aCCUCaa------------CCGCGACG--------------GGUGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 122776 0.71 0.448849
Target:  5'- cGGGGccucuugccgccggGGCGCUGCgggcccuuggucgaCCGCCGCCGAUc -3'
miRNA:   3'- aCCUCaa------------CCGCGACG--------------GGUGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 32355 0.71 0.463272
Target:  5'- gGGGGUgcuucggggcuguucUGGCGaggaUGCCgGCgGCCGGCg -3'
miRNA:   3'- aCCUCA---------------ACCGCg---ACGGgUGgUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 151382 0.71 0.463272
Target:  5'- gGGGGUgcuucggggcuguucUGGCGaggaUGCCgGCgGCCGGCg -3'
miRNA:   3'- aCCUCA---------------ACCGCg---ACGGgUGgUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 39408 0.71 0.468743
Target:  5'- aGGGGgcacuGCGCUGCUCAgCGCCGGa -3'
miRNA:   3'- aCCUCaac--CGCGACGGGUgGUGGCUg -5'
24600 3' -59.9 NC_005264.1 + 158435 0.71 0.468743
Target:  5'- aGGGGgcacuGCGCUGCUCAgCGCCGGa -3'
miRNA:   3'- aCCUCaac--CGCGACGGGUgGUGGCUg -5'
24600 3' -59.9 NC_005264.1 + 109505 0.7 0.50602
Target:  5'- aGGcuGGUUGG-GCUGCCC-CUGCUGGCc -3'
miRNA:   3'- aCC--UCAACCgCGACGGGuGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 55561 0.7 0.51554
Target:  5'- cUGGAGggggGaGCGCgGCCCACUgcaGCgGACa -3'
miRNA:   3'- -ACCUCaa--C-CGCGaCGGGUGG---UGgCUG- -5'
24600 3' -59.9 NC_005264.1 + 158973 0.69 0.534789
Target:  5'- cGGAGacgUGGgGCaGCCCAauCC-CCGGCg -3'
miRNA:   3'- aCCUCa--ACCgCGaCGGGU--GGuGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 93490 0.69 0.534789
Target:  5'- ------aGGCGCUGCUgGCgGCCGGCg -3'
miRNA:   3'- accucaaCCGCGACGGgUGgUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.