Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24600 | 3' | -59.9 | NC_005264.1 | + | 3500 | 0.67 | 0.67379 |
Target: 5'- gUGGAGguuugcgGGCGUccUGUuuagUCACCACUGACc -3' miRNA: 3'- -ACCUCaa-----CCGCG--ACG----GGUGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 3750 | 0.71 | 0.448849 |
Target: 5'- cGGGGccucuugccgccggGGCGCUGCgggcccuuggucgaCCGCCGCCGAUc -3' miRNA: 3'- aCCUCaa------------CCGCGACG--------------GGUGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 4720 | 0.68 | 0.623818 |
Target: 5'- cUGGuccAGacGcCGCUGCCCGCCgaGCCGGCg -3' miRNA: 3'- -ACC---UCaaCcGCGACGGGUGG--UGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 8007 | 0.66 | 0.732581 |
Target: 5'- cGGGGccGGCagagGC-GCCCGCCACgaCGGCg -3' miRNA: 3'- aCCUCaaCCG----CGaCGGGUGGUG--GCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 11405 | 0.67 | 0.683718 |
Target: 5'- gGGAG-UGGCGUuccagcacaaagUcgcggcggacGCCgGCCGCCGGCa -3' miRNA: 3'- aCCUCaACCGCG------------A----------CGGgUGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 12146 | 0.66 | 0.751603 |
Target: 5'- ------cGGCGCUGCCCGuuGCUGGg -3' miRNA: 3'- accucaaCCGCGACGGGUggUGGCUg -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 16910 | 0.68 | 0.641839 |
Target: 5'- gGuGAGgcccaugcccGCGCUGaCCCGCCGCCGGa -3' miRNA: 3'- aC-CUCaac-------CGCGAC-GGGUGGUGGCUg -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 17278 | 0.66 | 0.751603 |
Target: 5'- cGGAGgcgacggGGCggaggGCUGCCCAUCuaACUGAa -3' miRNA: 3'- aCCUCaa-----CCG-----CGACGGGUGG--UGGCUg -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 20136 | 0.68 | 0.643841 |
Target: 5'- aUGcGGGcaGGCGaugGCgCGCCGCCGGCg -3' miRNA: 3'- -AC-CUCaaCCGCga-CGgGUGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 21566 | 0.66 | 0.760967 |
Target: 5'- gGGGGUUGGgGCaggcaUGCUagUACCGUCGGCg -3' miRNA: 3'- aCCUCAACCgCG-----ACGG--GUGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 30843 | 0.67 | 0.693606 |
Target: 5'- -----cUGGCGCcggucgGCCCaccGCCACCGGCc -3' miRNA: 3'- accucaACCGCGa-----CGGG---UGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 32355 | 0.71 | 0.463272 |
Target: 5'- gGGGGUgcuucggggcuguucUGGCGaggaUGCCgGCgGCCGGCg -3' miRNA: 3'- aCCUCA---------------ACCGCg---ACGGgUGgUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 37263 | 0.68 | 0.603818 |
Target: 5'- gUGGAcgaGGCGCUccugccgaaGCCCccuGCCGCCGAUu -3' miRNA: 3'- -ACCUcaaCCGCGA---------CGGG---UGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 39057 | 0.66 | 0.721972 |
Target: 5'- -cGAGUUcGCGCggcgGUCCACCcccggacGCCGGCu -3' miRNA: 3'- acCUCAAcCGCGa---CGGGUGG-------UGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 39408 | 0.71 | 0.468743 |
Target: 5'- aGGGGgcacuGCGCUGCUCAgCGCCGGa -3' miRNA: 3'- aCCUCaac--CGCGACGGGUgGUGGCUg -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 43164 | 0.73 | 0.335819 |
Target: 5'- aGGGGggGGCGCgugaGCCUcuaucgcgcuGCCugCGACg -3' miRNA: 3'- aCCUCaaCCGCGa---CGGG----------UGGugGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 45406 | 0.69 | 0.544509 |
Target: 5'- aUGGAGggcGGCGCccUGCgCGCCG-CGACa -3' miRNA: 3'- -ACCUCaa-CCGCG--ACGgGUGGUgGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 48342 | 0.67 | 0.653843 |
Target: 5'- gGGAGUUGGCGCa---CGCCAUggCGGCc -3' miRNA: 3'- aCCUCAACCGCGacggGUGGUG--GCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 51837 | 0.68 | 0.623818 |
Target: 5'- aGGGGUgGGCGCU-CCgCGggcgUCACCGACu -3' miRNA: 3'- aCCUCAaCCGCGAcGG-GU----GGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 54127 | 1.1 | 0.001083 |
Target: 5'- aUGGAGUUGGCGCUGCCCACCACCGACg -3' miRNA: 3'- -ACCUCAACCGCGACGGGUGGUGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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