Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24600 | 3' | -59.9 | NC_005264.1 | + | 54127 | 1.1 | 0.001083 |
Target: 5'- aUGGAGUUGGCGCUGCCCACCACCGACg -3' miRNA: 3'- -ACCUCAACCGCGACGGGUGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 3500 | 0.67 | 0.67379 |
Target: 5'- gUGGAGguuugcgGGCGUccUGUuuagUCACCACUGACc -3' miRNA: 3'- -ACCUCaa-----CCGCG--ACG----GGUGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 148798 | 0.67 | 0.683718 |
Target: 5'- aGGuGUauccuuGCGCuUGCCCuACCAUCGGCa -3' miRNA: 3'- aCCuCAac----CGCG-ACGGG-UGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 78506 | 0.66 | 0.751603 |
Target: 5'- cGGuGUUGGCaccgcGCUGgguaCgCGCCGCUGGCg -3' miRNA: 3'- aCCuCAACCG-----CGACg---G-GUGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 122776 | 0.71 | 0.448849 |
Target: 5'- cGGGGccucuugccgccggGGCGCUGCgggcccuuggucgaCCGCCGCCGAUc -3' miRNA: 3'- aCCUCaa------------CCGCGACG--------------GGUGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 151382 | 0.71 | 0.463272 |
Target: 5'- gGGGGUgcuucggggcuguucUGGCGaggaUGCCgGCgGCCGGCg -3' miRNA: 3'- aCCUCA---------------ACCGCg---ACGGgUGgUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 109505 | 0.7 | 0.50602 |
Target: 5'- aGGcuGGUUGG-GCUGCCC-CUGCUGGCc -3' miRNA: 3'- aCC--UCAACCgCGACGGGuGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 55561 | 0.7 | 0.51554 |
Target: 5'- cUGGAGggggGaGCGCgGCCCACUgcaGCgGACa -3' miRNA: 3'- -ACCUCaa--C-CGCGaCGGGUGG---UGgCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 131990 | 0.69 | 0.573987 |
Target: 5'- cGGGc--GGCGCg--CCGCCGCCGACg -3' miRNA: 3'- aCCUcaaCCGCGacgGGUGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 48342 | 0.67 | 0.653843 |
Target: 5'- gGGAGUUGGCGCa---CGCCAUggCGGCc -3' miRNA: 3'- aCCUCAACCGCGacggGUGGUG--GCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 91119 | 0.68 | 0.603818 |
Target: 5'- cGGAGUccUGGCucgaGUUGCCCucuaCugCGACu -3' miRNA: 3'- aCCUCA--ACCG----CGACGGGug--GugGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 56522 | 0.69 | 0.572998 |
Target: 5'- gUGGAGggGuCGCccUGCCCGCCGcagcugucgcucuCCGACu -3' miRNA: 3'- -ACCUCaaCcGCG--ACGGGUGGU-------------GGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 67883 | 0.8 | 0.12546 |
Target: 5'- gGGAaugGGcCGCgagGCCCACCACCGACg -3' miRNA: 3'- aCCUcaaCC-GCGa--CGGGUGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 156290 | 0.68 | 0.603818 |
Target: 5'- gUGGAcgaGGCGCUccugccgaaGCCCccuGCCGCCGAUu -3' miRNA: 3'- -ACCUcaaCCGCGA---------CGGG---UGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 108508 | 0.74 | 0.307183 |
Target: 5'- gUGGGGUacGGCGUcgUGCgCCACCACCGugGCa -3' miRNA: 3'- -ACCUCAa-CCGCG--ACG-GGUGGUGGC--UG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 93490 | 0.69 | 0.534789 |
Target: 5'- ------aGGCGCUGCUgGCgGCCGGCg -3' miRNA: 3'- accucaaCCGCGACGGgUGgUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 68410 | 0.68 | 0.632829 |
Target: 5'- gGGAGgacGG-GCUGCUCGCUcuggacuACCGGCg -3' miRNA: 3'- aCCUCaa-CCgCGACGGGUGG-------UGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 140597 | 0.67 | 0.67379 |
Target: 5'- cUGGuuagaGGCGaCcGCCCagACCGCCGACg -3' miRNA: 3'- -ACCucaa-CCGC-GaCGGG--UGGUGGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 162191 | 0.73 | 0.335819 |
Target: 5'- aGGGGggGGCGCgugaGCCUcuaucgcgcuGCCugCGACg -3' miRNA: 3'- aCCUCaaCCGCGa---CGGG----------UGGugGCUG- -5' |
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24600 | 3' | -59.9 | NC_005264.1 | + | 158435 | 0.71 | 0.468743 |
Target: 5'- aGGGGgcacuGCGCUGCUCAgCGCCGGa -3' miRNA: 3'- aCCUCaac--CGCGACGGGUgGUGGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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