Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24601 | 3' | -53.8 | NC_005264.1 | + | 54328 | 1.07 | 0.005398 |
Target: 5'- aUCCAGCAGUAAGCGCGCGGCGUUUAUg -3' miRNA: 3'- -AGGUCGUCAUUCGCGCGCCGCAAAUA- -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 24404 | 0.78 | 0.38142 |
Target: 5'- gUCCA--AGUAAGCGCGCGGCGcgUUAa -3' miRNA: 3'- -AGGUcgUCAUUCGCGCGCCGCa-AAUa -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 97421 | 0.75 | 0.541917 |
Target: 5'- gUUCGGCAGUGAGCGCuGCgGGCGc---- -3' miRNA: 3'- -AGGUCGUCAUUCGCG-CG-CCGCaaaua -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 103124 | 0.74 | 0.583233 |
Target: 5'- gUCCGGCgcGGUAgccgccggcgcGGCGCGCGGCGc---- -3' miRNA: 3'- -AGGUCG--UCAU-----------UCGCGCGCCGCaaaua -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 102757 | 0.74 | 0.604142 |
Target: 5'- gCCGGCAGUAGGCuaGgGGCGg---- -3' miRNA: 3'- aGGUCGUCAUUCGcgCgCCGCaaaua -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 87520 | 0.73 | 0.667127 |
Target: 5'- aCCGGCAcu-GGCGCGCGGCa----- -3' miRNA: 3'- aGGUCGUcauUCGCGCGCCGcaaaua -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 74300 | 0.72 | 0.687979 |
Target: 5'- -gCGGCGGUcuGGCGCGCGGCa----- -3' miRNA: 3'- agGUCGUCAu-UCGCGCGCCGcaaaua -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 115724 | 0.72 | 0.698336 |
Target: 5'- aUCCGGCauGGUAgGGgGCGCGGCGa---- -3' miRNA: 3'- -AGGUCG--UCAU-UCgCGCGCCGCaaaua -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 132906 | 0.72 | 0.708635 |
Target: 5'- aCCGGC--UAGGCGCaGCGGCGUa--- -3' miRNA: 3'- aGGUCGucAUUCGCG-CGCCGCAaaua -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 48242 | 0.71 | 0.778252 |
Target: 5'- gCCuGCGGcAAGCGUGUGGCGg---- -3' miRNA: 3'- aGGuCGUCaUUCGCGCGCCGCaaaua -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 6897 | 0.7 | 0.787724 |
Target: 5'- gCCGcGCAGUcccAGCGCGCGGCu----- -3' miRNA: 3'- aGGU-CGUCAu--UCGCGCGCCGcaaaua -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 599 | 0.7 | 0.806217 |
Target: 5'- cUCCGGCAGcgAGGCGacuacgGUGGCGUUc-- -3' miRNA: 3'- -AGGUCGUCa-UUCGCg-----CGCCGCAAaua -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 120958 | 0.7 | 0.806217 |
Target: 5'- cUCCGGCaagAGUcuGUGCGCGGcCGUUg-- -3' miRNA: 3'- -AGGUCG---UCAuuCGCGCGCC-GCAAaua -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 1932 | 0.7 | 0.806217 |
Target: 5'- cUCCGGCaagAGUcuGUGCGCGGcCGUUg-- -3' miRNA: 3'- -AGGUCG---UCAuuCGCGCGCC-GCAAaua -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 78604 | 0.7 | 0.815218 |
Target: 5'- gUCCAcGCGGUAGGCaagcuCGCGGCGc---- -3' miRNA: 3'- -AGGU-CGUCAUUCGc----GCGCCGCaaaua -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 144893 | 0.69 | 0.832686 |
Target: 5'- uUCUucuGGgcGGCGCGCGGCGUUa-- -3' miRNA: 3'- -AGGucgUCauUCGCGCGCCGCAAaua -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 126098 | 0.69 | 0.832686 |
Target: 5'- gUCUGGcCAGUAGGCgggcaaggaauGCGCGGCGgcUGa -3' miRNA: 3'- -AGGUC-GUCAUUCG-----------CGCGCCGCaaAUa -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 8315 | 0.69 | 0.832686 |
Target: 5'- gCCGGCAcgcuuGUuuGCGCGCGGCa----- -3' miRNA: 3'- aGGUCGU-----CAuuCGCGCGCCGcaaaua -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 115624 | 0.69 | 0.841135 |
Target: 5'- gCCGGCAGUcgaAAGgGCGCcGCGUa--- -3' miRNA: 3'- aGGUCGUCA---UUCgCGCGcCGCAaaua -5' |
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24601 | 3' | -53.8 | NC_005264.1 | + | 29392 | 0.69 | 0.841135 |
Target: 5'- cUUgAGCcGUAAGCGUGCGGCa----- -3' miRNA: 3'- -AGgUCGuCAUUCGCGCGCCGcaaaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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