miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24601 3' -53.8 NC_005264.1 + 599 0.7 0.806217
Target:  5'- cUCCGGCAGcgAGGCGacuacgGUGGCGUUc-- -3'
miRNA:   3'- -AGGUCGUCa-UUCGCg-----CGCCGCAAaua -5'
24601 3' -53.8 NC_005264.1 + 802 0.68 0.872857
Target:  5'- cUCCAGUacGGcUGGGUGCGCGGCc----- -3'
miRNA:   3'- -AGGUCG--UC-AUUCGCGCGCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 1932 0.7 0.806217
Target:  5'- cUCCGGCaagAGUcuGUGCGCGGcCGUUg-- -3'
miRNA:   3'- -AGGUCG---UCAuuCGCGCGCC-GCAAaua -5'
24601 3' -53.8 NC_005264.1 + 5407 0.66 0.953895
Target:  5'- gCCAGCAG--GGCGUacGCGGCa----- -3'
miRNA:   3'- aGGUCGUCauUCGCG--CGCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 5984 0.66 0.953895
Target:  5'- gCCAGUAcauuAGCaGCGCGGCGg---- -3'
miRNA:   3'- aGGUCGUcau-UCG-CGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 6897 0.7 0.787724
Target:  5'- gCCGcGCAGUcccAGCGCGCGGCu----- -3'
miRNA:   3'- aGGU-CGUCAu--UCGCGCGCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 8315 0.69 0.832686
Target:  5'- gCCGGCAcgcuuGUuuGCGCGCGGCa----- -3'
miRNA:   3'- aGGUCGU-----CAuuCGCGCGCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 11415 0.66 0.957829
Target:  5'- uUCCAGCAcaAAGU-CGCGGCGg---- -3'
miRNA:   3'- -AGGUCGUcaUUCGcGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 12538 0.69 0.849384
Target:  5'- gCCGGUAG-GAGCGgGgGGCGUUc-- -3'
miRNA:   3'- aGGUCGUCaUUCGCgCgCCGCAAaua -5'
24601 3' -53.8 NC_005264.1 + 22767 0.68 0.894287
Target:  5'- -gCGGCGGgcaaugAGGgGCGCGGCGa---- -3'
miRNA:   3'- agGUCGUCa-----UUCgCGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 24404 0.78 0.38142
Target:  5'- gUCCA--AGUAAGCGCGCGGCGcgUUAa -3'
miRNA:   3'- -AGGUcgUCAUUCGCGCGCCGCa-AAUa -5'
24601 3' -53.8 NC_005264.1 + 27898 0.67 0.913545
Target:  5'- gCCAGCgucucggcgagGGUGAGCGacgacgacCGCGGUGUUg-- -3'
miRNA:   3'- aGGUCG-----------UCAUUCGC--------GCGCCGCAAaua -5'
24601 3' -53.8 NC_005264.1 + 29132 0.67 0.925137
Target:  5'- gCCagaGGCAGcaccAGUGCGCGGCGg---- -3'
miRNA:   3'- aGG---UCGUCau--UCGCGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 29392 0.69 0.841135
Target:  5'- cUUgAGCcGUAAGCGUGCGGCa----- -3'
miRNA:   3'- -AGgUCGuCAUUCGCGCGCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 34082 0.66 0.957829
Target:  5'- gCCcGCAGUuuGC-CGCGGCGg---- -3'
miRNA:   3'- aGGuCGUCAuuCGcGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 48242 0.71 0.778252
Target:  5'- gCCuGCGGcAAGCGUGUGGCGg---- -3'
miRNA:   3'- aGGuCGUCaUUCGCGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 48383 0.66 0.949721
Target:  5'- gCCGGUAGacugGGGCGUcggGCGGCGg---- -3'
miRNA:   3'- aGGUCGUCa---UUCGCG---CGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 54328 1.07 0.005398
Target:  5'- aUCCAGCAGUAAGCGCGCGGCGUUUAUg -3'
miRNA:   3'- -AGGUCGUCAUUCGCGCGCCGCAAAUA- -5'
24601 3' -53.8 NC_005264.1 + 54581 0.67 0.934198
Target:  5'- gCCAGCuAGUGAGCGUGgucaacgccggccuCGGCGcgUGc -3'
miRNA:   3'- aGGUCG-UCAUUCGCGC--------------GCCGCaaAUa -5'
24601 3' -53.8 NC_005264.1 + 54891 0.66 0.940157
Target:  5'- gCCaAGUcacucugGGUAAGCGCGuCGGCGg---- -3'
miRNA:   3'- aGG-UCG-------UCAUUCGCGC-GCCGCaaaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.