miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24601 3' -53.8 NC_005264.1 + 54328 1.07 0.005398
Target:  5'- aUCCAGCAGUAAGCGCGCGGCGUUUAUg -3'
miRNA:   3'- -AGGUCGUCAUUCGCGCGCCGCAAAUA- -5'
24601 3' -53.8 NC_005264.1 + 27898 0.67 0.913545
Target:  5'- gCCAGCgucucggcgagGGUGAGCGacgacgacCGCGGUGUUg-- -3'
miRNA:   3'- aGGUCG-----------UCAUUCGC--------GCGCCGCAAaua -5'
24601 3' -53.8 NC_005264.1 + 76140 0.67 0.930556
Target:  5'- -aCGGCGGcaaagaccGCGCGCGGCGa---- -3'
miRNA:   3'- agGUCGUCauu-----CGCGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 139295 0.66 0.957829
Target:  5'- aUCC-GCGGU-AGCGCGUaGCGUUc-- -3'
miRNA:   3'- -AGGuCGUCAuUCGCGCGcCGCAAaua -5'
24601 3' -53.8 NC_005264.1 + 48242 0.71 0.778252
Target:  5'- gCCuGCGGcAAGCGUGUGGCGg---- -3'
miRNA:   3'- aGGuCGUCaUUCGCGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 6897 0.7 0.787724
Target:  5'- gCCGcGCAGUcccAGCGCGCGGCu----- -3'
miRNA:   3'- aGGU-CGUCAu--UCGCGCGCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 120958 0.7 0.806217
Target:  5'- cUCCGGCaagAGUcuGUGCGCGGcCGUUg-- -3'
miRNA:   3'- -AGGUCG---UCAuuCGCGCGCC-GCAAaua -5'
24601 3' -53.8 NC_005264.1 + 78604 0.7 0.815218
Target:  5'- gUCCAcGCGGUAGGCaagcuCGCGGCGc---- -3'
miRNA:   3'- -AGGU-CGUCAUUCGc----GCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 131565 0.69 0.849384
Target:  5'- gCCGGUAG-GAGCGgGgGGCGUUc-- -3'
miRNA:   3'- aGGUCGUCaUUCGCgCgCCGCAAaua -5'
24601 3' -53.8 NC_005264.1 + 22767 0.68 0.894287
Target:  5'- -gCGGCGGgcaaugAGGgGCGCGGCGa---- -3'
miRNA:   3'- agGUCGUCa-----UUCgCGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 134527 0.69 0.857425
Target:  5'- aCUAGaC-GUAGGCGCGCGGCa----- -3'
miRNA:   3'- aGGUC-GuCAUUCGCGCGCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 115624 0.69 0.841135
Target:  5'- gCCGGCAGUcgaAAGgGCGCcGCGUa--- -3'
miRNA:   3'- aGGUCGUCA---UUCgCGCGcCGCAaaua -5'
24601 3' -53.8 NC_005264.1 + 24404 0.78 0.38142
Target:  5'- gUCCA--AGUAAGCGCGCGGCGcgUUAa -3'
miRNA:   3'- -AGGUcgUCAUUCGCGCGCCGCa-AAUa -5'
24601 3' -53.8 NC_005264.1 + 802 0.68 0.872857
Target:  5'- cUCCAGUacGGcUGGGUGCGCGGCc----- -3'
miRNA:   3'- -AGGUCG--UC-AUUCGCGCGCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 97421 0.75 0.541917
Target:  5'- gUUCGGCAGUGAGCGCuGCgGGCGc---- -3'
miRNA:   3'- -AGGUCGUCAUUCGCG-CG-CCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 8315 0.69 0.832686
Target:  5'- gCCGGCAcgcuuGUuuGCGCGCGGCa----- -3'
miRNA:   3'- aGGUCGU-----CAuuCGCGCGCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 75799 0.68 0.872857
Target:  5'- cUCCAGgucgucgccguCcGUAGGCGCGCGGUGg---- -3'
miRNA:   3'- -AGGUC-----------GuCAUUCGCGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 100904 0.67 0.913545
Target:  5'- cUCUAGCAGUuccucuucgcgcAAGCG-GCGGCGc---- -3'
miRNA:   3'- -AGGUCGUCA------------UUCGCgCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 87520 0.73 0.667127
Target:  5'- aCCGGCAcu-GGCGCGCGGCa----- -3'
miRNA:   3'- aGGUCGUcauUCGCGCGCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 599 0.7 0.806217
Target:  5'- cUCCGGCAGcgAGGCGacuacgGUGGCGUUc-- -3'
miRNA:   3'- -AGGUCGUCa-UUCGCg-----CGCCGCAAaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.