Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24616 | 3' | -55.6 | NC_005264.1 | + | 68868 | 1.11 | 0.002647 |
Target: 5'- uGCGUGAACGGCGCGUUCAGCUCCGUCu -3' miRNA: 3'- -CGCACUUGCCGCGCAAGUCGAGGCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 79432 | 0.75 | 0.485504 |
Target: 5'- aGCGUGGGCGGUGCGg--GGuCUCCGg- -3' miRNA: 3'- -CGCACUUGCCGCGCaagUC-GAGGCag -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 42060 | 0.71 | 0.704849 |
Target: 5'- cGCGUugcccGCGGCGCGUggcgUCAGCUgCGcCg -3' miRNA: 3'- -CGCAcu---UGCCGCGCA----AGUCGAgGCaG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 61037 | 0.71 | 0.714766 |
Target: 5'- aGCGUaGAuuuugaccACGGCaucgaGCGUcUCGGCUCCGUUc -3' miRNA: 3'- -CGCA-CU--------UGCCG-----CGCA-AGUCGAGGCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 154920 | 0.71 | 0.735355 |
Target: 5'- cGCGUGGACGcGCGCGUUgcUAGCcagagcgugggggaCGUCg -3' miRNA: 3'- -CGCACUUGC-CGCGCAA--GUCGag------------GCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 7057 | 0.7 | 0.744064 |
Target: 5'- aGCGgcGACGGCGcCGgcCGGCgCCGUCg -3' miRNA: 3'- -CGCacUUGCCGC-GCaaGUCGaGGCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 126084 | 0.7 | 0.744064 |
Target: 5'- aGCGgcGACGGCGcCGgcCGGCgCCGUCg -3' miRNA: 3'- -CGCacUUGCCGC-GCaaGUCGaGGCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 47615 | 0.7 | 0.753649 |
Target: 5'- cGCGcGAACGGCGCGUaCAuauGUUCUGg- -3' miRNA: 3'- -CGCaCUUGCCGCGCAaGU---CGAGGCag -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 123229 | 0.7 | 0.772492 |
Target: 5'- cCGUGucuaGGagcaaGCGcgCAGCUCCGUCu -3' miRNA: 3'- cGCACuug-CCg----CGCaaGUCGAGGCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 13560 | 0.7 | 0.781734 |
Target: 5'- ---aGAGCGGCGCGggCGGgaCCGg- -3' miRNA: 3'- cgcaCUUGCCGCGCaaGUCgaGGCag -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 132587 | 0.7 | 0.781734 |
Target: 5'- ---aGAGCGGCGCGggCGGgaCCGg- -3' miRNA: 3'- cgcaCUUGCCGCGCaaGUCgaGGCag -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 107980 | 0.7 | 0.781734 |
Target: 5'- aGCGUGAccgUGGaUGCGggCGGCUCCcagGUCa -3' miRNA: 3'- -CGCACUu--GCC-GCGCaaGUCGAGG---CAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 147023 | 0.69 | 0.825784 |
Target: 5'- aGCGcGAACGGCGuCGUUCG---UCGUCg -3' miRNA: 3'- -CGCaCUUGCCGC-GCAAGUcgaGGCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 78015 | 0.69 | 0.825784 |
Target: 5'- uGCGUGcauGACGGCGaggcUUC-GCUCCGUg -3' miRNA: 3'- -CGCAC---UUGCCGCgc--AAGuCGAGGCAg -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 155774 | 0.69 | 0.834105 |
Target: 5'- aGCGc-GACGGCGcCGgcCGGCgCCGUCg -3' miRNA: 3'- -CGCacUUGCCGC-GCaaGUCGaGGCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 36748 | 0.69 | 0.834105 |
Target: 5'- aGCGc-GACGGCGcCGgcCGGCgCCGUCg -3' miRNA: 3'- -CGCacUUGCCGC-GCaaGUCGaGGCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 131614 | 0.68 | 0.843049 |
Target: 5'- cGCGUGGGCGcGCGCGgagaagaacagauggUCAcGcCUCgGUCu -3' miRNA: 3'- -CGCACUUGC-CGCGCa--------------AGU-C-GAGgCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 26265 | 0.68 | 0.84941 |
Target: 5'- cGgGUcGAuuccGCGGCGCGUuccuggaucgcgaUCGGCUCCcgcGUCu -3' miRNA: 3'- -CgCA-CU----UGCCGCGCA-------------AGUCGAGG---CAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 8379 | 0.68 | 0.857954 |
Target: 5'- gGCGccgGAcGCGGCGCGUUgaAGCUgCCGg- -3' miRNA: 3'- -CGCa--CU-UGCCGCGCAAg-UCGA-GGCag -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 127406 | 0.68 | 0.857954 |
Target: 5'- gGCGccgGAcGCGGCGCGUUgaAGCUgCCGg- -3' miRNA: 3'- -CGCa--CU-UGCCGCGCAAg-UCGA-GGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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