Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24616 | 3' | -55.6 | NC_005264.1 | + | 5276 | 0.68 | 0.872858 |
Target: 5'- cGCGgccGGACGGCGgGgcggCGGCUgacCCGUg -3' miRNA: 3'- -CGCa--CUUGCCGCgCaa--GUCGA---GGCAg -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 7057 | 0.7 | 0.744064 |
Target: 5'- aGCGgcGACGGCGcCGgcCGGCgCCGUCg -3' miRNA: 3'- -CGCacUUGCCGC-GCaaGUCGaGGCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 8379 | 0.68 | 0.857954 |
Target: 5'- gGCGccgGAcGCGGCGCGUUgaAGCUgCCGg- -3' miRNA: 3'- -CGCa--CU-UGCCGCGCAAg-UCGA-GGCag -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 13560 | 0.7 | 0.781734 |
Target: 5'- ---aGAGCGGCGCGggCGGgaCCGg- -3' miRNA: 3'- cgcaCUUGCCGCGCaaGUCgaGGCag -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 26265 | 0.68 | 0.84941 |
Target: 5'- cGgGUcGAuuccGCGGCGCGUuccuggaucgcgaUCGGCUCCcgcGUCu -3' miRNA: 3'- -CgCA-CU----UGCCGCGCA-------------AGUCGAGG---CAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 33804 | 0.67 | 0.912335 |
Target: 5'- ---cGAACGGCGCGggCuacggGGCU-CGUCg -3' miRNA: 3'- cgcaCUUGCCGCGCaaG-----UCGAgGCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 35782 | 0.66 | 0.934033 |
Target: 5'- gGCG-GAG-GGCGCGgu-GGCgCCGUCg -3' miRNA: 3'- -CGCaCUUgCCGCGCaagUCGaGGCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 36706 | 0.67 | 0.891624 |
Target: 5'- gGCGcuAACGGCGCGUuggaaaccgaaaccUCAGUUCCc-- -3' miRNA: 3'- -CGCacUUGCCGCGCA--------------AGUCGAGGcag -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 36748 | 0.69 | 0.834105 |
Target: 5'- aGCGc-GACGGCGcCGgcCGGCgCCGUCg -3' miRNA: 3'- -CGCacUUGCCGC-GCaaGUCGaGGCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 38197 | 0.66 | 0.923655 |
Target: 5'- aGCGUcGcGCGGCcCGauagCGGCUCCGgUCg -3' miRNA: 3'- -CGCA-CuUGCCGcGCaa--GUCGAGGC-AG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 39664 | 0.67 | 0.90571 |
Target: 5'- gGCGUGGGCGGCaagcaucGCGacaAGCggCCGUg -3' miRNA: 3'- -CGCACUUGCCG-------CGCaagUCGa-GGCAg -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 40312 | 0.66 | 0.918112 |
Target: 5'- cGCGUaGACGGCGaGcgCAGCagUGUCg -3' miRNA: 3'- -CGCAcUUGCCGCgCaaGUCGagGCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 42060 | 0.71 | 0.704849 |
Target: 5'- cGCGUugcccGCGGCGCGUggcgUCAGCUgCGcCg -3' miRNA: 3'- -CGCAcu---UGCCGCGCA----AGUCGAgGCaG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 46590 | 0.66 | 0.942116 |
Target: 5'- cGCGUGcGgaggcucugucccuGCGGgGCGaggaCGGCUCCGUg -3' miRNA: 3'- -CGCAC-U--------------UGCCgCGCaa--GUCGAGGCAg -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 46851 | 0.66 | 0.928962 |
Target: 5'- gGCGacgcacACGGCcugGCGUUCAGCguccCUGUCg -3' miRNA: 3'- -CGCacu---UGCCG---CGCAAGUCGa---GGCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 47615 | 0.7 | 0.753649 |
Target: 5'- cGCGcGAACGGCGCGUaCAuauGUUCUGg- -3' miRNA: 3'- -CGCaCUUGCCGCGCAaGU---CGAGGCag -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 50494 | 0.66 | 0.943472 |
Target: 5'- aCGUGGccACGGcCGCGgcCAGUUCUGcCu -3' miRNA: 3'- cGCACU--UGCC-GCGCaaGUCGAGGCaG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 59019 | 0.67 | 0.900081 |
Target: 5'- cGCG-GAGgcaGGCGCG-UCAGgUCgGUCu -3' miRNA: 3'- -CGCaCUUg--CCGCGCaAGUCgAGgCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 61037 | 0.71 | 0.714766 |
Target: 5'- aGCGUaGAuuuugaccACGGCaucgaGCGUcUCGGCUCCGUUc -3' miRNA: 3'- -CGCA-CU--------UGCCG-----CGCA-AGUCGAGGCAG- -5' |
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24616 | 3' | -55.6 | NC_005264.1 | + | 67164 | 0.67 | 0.912335 |
Target: 5'- aGCGUucucauucaaGAACGGCGCGagaAGCUCaauuguguucgCGUCc -3' miRNA: 3'- -CGCA----------CUUGCCGCGCaagUCGAG-----------GCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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