miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24616 3' -55.6 NC_005264.1 + 68868 1.11 0.002647
Target:  5'- uGCGUGAACGGCGCGUUCAGCUCCGUCu -3'
miRNA:   3'- -CGCACUUGCCGCGCAAGUCGAGGCAG- -5'
24616 3' -55.6 NC_005264.1 + 154808 0.66 0.934033
Target:  5'- gGCG-GAG-GGCGCGgu-GGCgCCGUCg -3'
miRNA:   3'- -CGCaCUUgCCGCGCaagUCGaGGCAG- -5'
24616 3' -55.6 NC_005264.1 + 46590 0.66 0.942116
Target:  5'- cGCGUGcGgaggcucugucccuGCGGgGCGaggaCGGCUCCGUg -3'
miRNA:   3'- -CGCAC-U--------------UGCCgCGCaa--GUCGAGGCAg -5'
24616 3' -55.6 NC_005264.1 + 50494 0.66 0.943472
Target:  5'- aCGUGGccACGGcCGCGgcCAGUUCUGcCu -3'
miRNA:   3'- cGCACU--UGCC-GCGCaaGUCGAGGCaG- -5'
24616 3' -55.6 NC_005264.1 + 132587 0.7 0.781734
Target:  5'- ---aGAGCGGCGCGggCGGgaCCGg- -3'
miRNA:   3'- cgcaCUUGCCGCGCaaGUCgaGGCag -5'
24616 3' -55.6 NC_005264.1 + 78015 0.69 0.825784
Target:  5'- uGCGUGcauGACGGCGaggcUUC-GCUCCGUg -3'
miRNA:   3'- -CGCAC---UUGCCGCgc--AAGuCGAGGCAg -5'
24616 3' -55.6 NC_005264.1 + 155774 0.69 0.834105
Target:  5'- aGCGc-GACGGCGcCGgcCGGCgCCGUCg -3'
miRNA:   3'- -CGCacUUGCCGC-GCaaGUCGaGGCAG- -5'
24616 3' -55.6 NC_005264.1 + 127406 0.68 0.857954
Target:  5'- gGCGccgGAcGCGGCGCGUUgaAGCUgCCGg- -3'
miRNA:   3'- -CGCa--CU-UGCCGCGCAAg-UCGA-GGCag -5'
24616 3' -55.6 NC_005264.1 + 158690 0.67 0.90571
Target:  5'- gGCGUGGGCGGCaagcaucGCGacaAGCggCCGUg -3'
miRNA:   3'- -CGCACUUGCCG-------CGCaagUCGa-GGCAg -5'
24616 3' -55.6 NC_005264.1 + 40312 0.66 0.918112
Target:  5'- cGCGUaGACGGCGaGcgCAGCagUGUCg -3'
miRNA:   3'- -CGCAcUUGCCGCgCaaGUCGagGCAG- -5'
24616 3' -55.6 NC_005264.1 + 155732 0.67 0.891624
Target:  5'- gGCGcuAACGGCGCGUuggaaaccgaaaccUCAGUUCCc-- -3'
miRNA:   3'- -CGCacUUGCCGCGCA--------------AGUCGAGGcag -5'
24616 3' -55.6 NC_005264.1 + 42060 0.71 0.704849
Target:  5'- cGCGUugcccGCGGCGCGUggcgUCAGCUgCGcCg -3'
miRNA:   3'- -CGCAcu---UGCCGCGCA----AGUCGAgGCaG- -5'
24616 3' -55.6 NC_005264.1 + 142038 0.66 0.923655
Target:  5'- gGCGUGcAUGGCGUGcaCGGUUCCc-- -3'
miRNA:   3'- -CGCACuUGCCGCGCaaGUCGAGGcag -5'
24616 3' -55.6 NC_005264.1 + 61037 0.71 0.714766
Target:  5'- aGCGUaGAuuuugaccACGGCaucgaGCGUcUCGGCUCCGUUc -3'
miRNA:   3'- -CGCA-CU--------UGCCG-----CGCA-AGUCGAGGCAG- -5'
24616 3' -55.6 NC_005264.1 + 124303 0.68 0.872858
Target:  5'- cGCGgccGGACGGCGgGgcggCGGCUgacCCGUg -3'
miRNA:   3'- -CGCa--CUUGCCGCgCaa--GUCGA---GGCAg -5'
24616 3' -55.6 NC_005264.1 + 157224 0.66 0.923655
Target:  5'- aGCGUcGcGCGGCcCGauagCGGCUCCGgUCg -3'
miRNA:   3'- -CGCA-CuUGCCGcGCaa--GUCGAGGC-AG- -5'
24616 3' -55.6 NC_005264.1 + 110054 0.66 0.943472
Target:  5'- aCGcGAGCGGCGCGaaagCAucGCUCCa-- -3'
miRNA:   3'- cGCaCUUGCCGCGCaa--GU--CGAGGcag -5'
24616 3' -55.6 NC_005264.1 + 126084 0.7 0.744064
Target:  5'- aGCGgcGACGGCGcCGgcCGGCgCCGUCg -3'
miRNA:   3'- -CGCacUUGCCGC-GCaaGUCGaGGCAG- -5'
24616 3' -55.6 NC_005264.1 + 147023 0.69 0.825784
Target:  5'- aGCGcGAACGGCGuCGUUCG---UCGUCg -3'
miRNA:   3'- -CGCaCUUGCCGC-GCAAGUcgaGGCAG- -5'
24616 3' -55.6 NC_005264.1 + 152830 0.67 0.912335
Target:  5'- ---cGAACGGCGCGggCuacggGGCU-CGUCg -3'
miRNA:   3'- cgcaCUUGCCGCGCaaG-----UCGAgGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.