miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24629 5' -56.3 NC_005264.1 + 79687 1.09 0.003098
Target:  5'- cCAUCCCCGCGACAGACACCAUGAGGGc -3'
miRNA:   3'- -GUAGGGGCGCUGUCUGUGGUACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 92700 0.75 0.468699
Target:  5'- --gCCgCCGCGGCAGcaaGCACguUGAGGGa -3'
miRNA:   3'- guaGG-GGCGCUGUC---UGUGguACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 12555 0.74 0.487299
Target:  5'- gCGUUCgCCGCGA-AGAUACCGcUGAGGGg -3'
miRNA:   3'- -GUAGG-GGCGCUgUCUGUGGU-ACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 131582 0.74 0.487299
Target:  5'- gCGUUCgCCGCGA-AGAUACCGcUGAGGGg -3'
miRNA:   3'- -GUAGG-GGCGCUgUCUGUGGU-ACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 24469 0.74 0.515829
Target:  5'- --gUUCCGCGGCGGAUAacUCGUGAGGGc -3'
miRNA:   3'- guaGGGGCGCUGUCUGU--GGUACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 161128 0.73 0.594706
Target:  5'- aCAUCCCUGCcuACGGGCACC-UGgcAGGGu -3'
miRNA:   3'- -GUAGGGGCGc-UGUCUGUGGuAC--UCCC- -5'
24629 5' -56.3 NC_005264.1 + 42101 0.73 0.594706
Target:  5'- aCAUCCCUGCcuACGGGCACC-UGgcAGGGu -3'
miRNA:   3'- -GUAGGGGCGc-UGUCUGUGGuAC--UCCC- -5'
24629 5' -56.3 NC_005264.1 + 36386 0.72 0.634976
Target:  5'- gUAUCUCCGCGcUAGGCGCCAucuagcugacgUGAGGc -3'
miRNA:   3'- -GUAGGGGCGCuGUCUGUGGU-----------ACUCCc -5'
24629 5' -56.3 NC_005264.1 + 3285 0.71 0.655127
Target:  5'- aCGUCCCUggGCGACGGGgA--GUGAGGGg -3'
miRNA:   3'- -GUAGGGG--CGCUGUCUgUggUACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 122312 0.71 0.655127
Target:  5'- aCGUCCCUggGCGACGGGgA--GUGAGGGg -3'
miRNA:   3'- -GUAGGGG--CGCUGUCUgUggUACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 31562 0.71 0.6852
Target:  5'- cCAUUCCCGaCGugGaGGCGCCAgagGuGGGg -3'
miRNA:   3'- -GUAGGGGC-GCugU-CUGUGGUa--CuCCC- -5'
24629 5' -56.3 NC_005264.1 + 150589 0.71 0.6852
Target:  5'- cCAUUCCCGaCGugGaGGCGCCAgagGuGGGg -3'
miRNA:   3'- -GUAGGGGC-GCugU-CUGUGGUa--CuCCC- -5'
24629 5' -56.3 NC_005264.1 + 103613 0.7 0.714888
Target:  5'- gAUUCCCGCGAauuugcucGAgGCCAUGuGGGc -3'
miRNA:   3'- gUAGGGGCGCUgu------CUgUGGUACuCCC- -5'
24629 5' -56.3 NC_005264.1 + 44615 0.7 0.734352
Target:  5'- -uUCCUgGUGGCGGACAUCAccgcggccGAGGGa -3'
miRNA:   3'- guAGGGgCGCUGUCUGUGGUa-------CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 161976 0.7 0.743959
Target:  5'- aCGUCCgggCGCGGCA-ACGCCucgGAGGGg -3'
miRNA:   3'- -GUAGGg--GCGCUGUcUGUGGua-CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 42949 0.7 0.743959
Target:  5'- aCGUCCgggCGCGGCA-ACGCCucgGAGGGg -3'
miRNA:   3'- -GUAGGg--GCGCUGUcUGUGGua-CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 134433 0.7 0.747776
Target:  5'- --aCCCCGCGACAcGCAuacCCAcgcccaggaucggcaUGGGGGa -3'
miRNA:   3'- guaGGGGCGCUGUcUGU---GGU---------------ACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 21227 0.7 0.753471
Target:  5'- --gCCCCgaccGCGAUuuGGACGUCAUGAGGGc -3'
miRNA:   3'- guaGGGG----CGCUG--UCUGUGGUACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 49763 0.69 0.772176
Target:  5'- --aCCCCGCGGCuauAGcACACUuggagGAGGGc -3'
miRNA:   3'- guaGGGGCGCUG---UC-UGUGGua---CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 137637 0.69 0.772176
Target:  5'- -cUCCCCGCucGACAGACACa--GGGcGGc -3'
miRNA:   3'- guAGGGGCG--CUGUCUGUGguaCUC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.