miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24629 5' -56.3 NC_005264.1 + 79687 1.09 0.003098
Target:  5'- cCAUCCCCGCGACAGACACCAUGAGGGc -3'
miRNA:   3'- -GUAGGGGCGCUGUCUGUGGUACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 15694 0.67 0.879048
Target:  5'- -cUCCUCGC-ACAGaACGCCGUcGAGuGGa -3'
miRNA:   3'- guAGGGGCGcUGUC-UGUGGUA-CUC-CC- -5'
24629 5' -56.3 NC_005264.1 + 75094 0.66 0.899077
Target:  5'- --gCgCUGCGGCAGGCGCCGgcgccgagcUGGGGc -3'
miRNA:   3'- guaGgGGCGCUGUCUGUGGU---------ACUCCc -5'
24629 5' -56.3 NC_005264.1 + 86098 0.66 0.926371
Target:  5'- -uUCCCCaaGACGGcgaagaugcgccgcGCACCAUGAGc- -3'
miRNA:   3'- guAGGGGcgCUGUC--------------UGUGGUACUCcc -5'
24629 5' -56.3 NC_005264.1 + 122312 0.71 0.655127
Target:  5'- aCGUCCCUggGCGACGGGgA--GUGAGGGg -3'
miRNA:   3'- -GUAGGGG--CGCUGUCUgUggUACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 150589 0.71 0.6852
Target:  5'- cCAUUCCCGaCGugGaGGCGCCAgagGuGGGg -3'
miRNA:   3'- -GUAGGGGC-GCugU-CUGUGGUa--CuCCC- -5'
24629 5' -56.3 NC_005264.1 + 161976 0.7 0.743959
Target:  5'- aCGUCCgggCGCGGCA-ACGCCucgGAGGGg -3'
miRNA:   3'- -GUAGGg--GCGCUGUcUGUGGua-CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 21227 0.7 0.753471
Target:  5'- --gCCCCgaccGCGAUuuGGACGUCAUGAGGGc -3'
miRNA:   3'- guaGGGG----CGCUG--UCUGUGGUACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 50148 0.69 0.808061
Target:  5'- -uUCCCUGCGAU-GGCGCac-GAGGGc -3'
miRNA:   3'- guAGGGGCGCUGuCUGUGguaCUCCC- -5'
24629 5' -56.3 NC_005264.1 + 126782 0.67 0.871939
Target:  5'- -cUCUCCGCGucggcaguCGGGCACUgagcGAGGGg -3'
miRNA:   3'- guAGGGGCGCu-------GUCUGUGGua--CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 14653 0.68 0.841474
Target:  5'- -uUCCCuCGCGgcaacgGCAGAgACCAUGcugccGGGGc -3'
miRNA:   3'- guAGGG-GCGC------UGUCUgUGGUAC-----UCCC- -5'
24629 5' -56.3 NC_005264.1 + 150151 0.69 0.799302
Target:  5'- gGUCCCgggcguggucCGCGACGGAC-CCGUGcGGu -3'
miRNA:   3'- gUAGGG----------GCGCUGUCUGuGGUACuCCc -5'
24629 5' -56.3 NC_005264.1 + 131582 0.74 0.487299
Target:  5'- gCGUUCgCCGCGA-AGAUACCGcUGAGGGg -3'
miRNA:   3'- -GUAGG-GGCGCUgUCUGUGGU-ACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 116417 0.68 0.841474
Target:  5'- ---gCCCGCGGCAGGuCGCU--GGGGGc -3'
miRNA:   3'- guagGGGCGCUGUCU-GUGGuaCUCCC- -5'
24629 5' -56.3 NC_005264.1 + 161128 0.73 0.594706
Target:  5'- aCAUCCCUGCcuACGGGCACC-UGgcAGGGu -3'
miRNA:   3'- -GUAGGGGCGc-UGUCUGUGGuAC--UCCC- -5'
24629 5' -56.3 NC_005264.1 + 49763 0.69 0.772176
Target:  5'- --aCCCCGCGGCuauAGcACACUuggagGAGGGc -3'
miRNA:   3'- guaGGGGCGCUG---UC-UGUGGua---CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 6998 0.67 0.871217
Target:  5'- uGUCCCUGCGGgcGGCGCCAacgugaaaguuauUGGGGu -3'
miRNA:   3'- gUAGGGGCGCUguCUGUGGU-------------ACUCCc -5'
24629 5' -56.3 NC_005264.1 + 80227 0.66 0.898441
Target:  5'- aUAUCCCCucccaacgaagucGCGAUugucACGCCuUGAGGGc -3'
miRNA:   3'- -GUAGGGG-------------CGCUGuc--UGUGGuACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 36386 0.72 0.634976
Target:  5'- gUAUCUCCGCGcUAGGCGCCAucuagcugacgUGAGGc -3'
miRNA:   3'- -GUAGGGGCGCuGUCUGUGGU-----------ACUCCc -5'
24629 5' -56.3 NC_005264.1 + 44615 0.7 0.734352
Target:  5'- -uUCCUgGUGGCGGACAUCAccgcggccGAGGGa -3'
miRNA:   3'- guAGGGgCGCUGUCUGUGGUa-------CUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.