Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24629 | 5' | -56.3 | NC_005264.1 | + | 3285 | 0.71 | 0.655127 |
Target: 5'- aCGUCCCUggGCGACGGGgA--GUGAGGGg -3' miRNA: 3'- -GUAGGGG--CGCUGUCUgUggUACUCCC- -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 6998 | 0.67 | 0.871217 |
Target: 5'- uGUCCCUGCGGgcGGCGCCAacgugaaaguuauUGGGGu -3' miRNA: 3'- gUAGGGGCGCUguCUGUGGU-------------ACUCCc -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 7756 | 0.67 | 0.871939 |
Target: 5'- -cUCUCCGCGucggcaguCGGGCACUgagcGAGGGg -3' miRNA: 3'- guAGGGGCGCu-------GUCUGUGGua--CUCCC- -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 12555 | 0.74 | 0.487299 |
Target: 5'- gCGUUCgCCGCGA-AGAUACCGcUGAGGGg -3' miRNA: 3'- -GUAGG-GGCGCUgUCUGUGGU-ACUCCC- -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 14653 | 0.68 | 0.841474 |
Target: 5'- -uUCCCuCGCGgcaacgGCAGAgACCAUGcugccGGGGc -3' miRNA: 3'- guAGGG-GCGC------UGUCUgUGGUAC-----UCCC- -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 15694 | 0.67 | 0.879048 |
Target: 5'- -cUCCUCGC-ACAGaACGCCGUcGAGuGGa -3' miRNA: 3'- guAGGGGCGcUGUC-UGUGGUA-CUC-CC- -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 21227 | 0.7 | 0.753471 |
Target: 5'- --gCCCCgaccGCGAUuuGGACGUCAUGAGGGc -3' miRNA: 3'- guaGGGG----CGCUG--UCUGUGGUACUCCC- -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 21285 | 0.67 | 0.892621 |
Target: 5'- cCAUCUCCaGCGGgGGACgcggACCAUGGcGGa -3' miRNA: 3'- -GUAGGGG-CGCUgUCUG----UGGUACUcCC- -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 24007 | 0.69 | 0.790395 |
Target: 5'- gAUCCCCGCGuCcaugguuccugGGuACACCcgGAGGu -3' miRNA: 3'- gUAGGGGCGCuG-----------UC-UGUGGuaCUCCc -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 24469 | 0.74 | 0.515829 |
Target: 5'- --gUUCCGCGGCGGAUAacUCGUGAGGGc -3' miRNA: 3'- guaGGGGCGCUGUCUGU--GGUACUCCC- -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 31124 | 0.69 | 0.799302 |
Target: 5'- gGUCCCgggcguggucCGCGACGGAC-CCGUGcGGu -3' miRNA: 3'- gUAGGG----------GCGCUGUCUGuGGUACuCCc -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 31562 | 0.71 | 0.6852 |
Target: 5'- cCAUUCCCGaCGugGaGGCGCCAgagGuGGGg -3' miRNA: 3'- -GUAGGGGC-GCugU-CUGUGGUa--CuCCC- -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 36386 | 0.72 | 0.634976 |
Target: 5'- gUAUCUCCGCGcUAGGCGCCAucuagcugacgUGAGGc -3' miRNA: 3'- -GUAGGGGCGCuGUCUGUGGU-----------ACUCCc -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 40637 | 0.67 | 0.871939 |
Target: 5'- -uUCCCCGCGcCGucgcGACGCg--GAGGGu -3' miRNA: 3'- guAGGGGCGCuGU----CUGUGguaCUCCC- -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 42101 | 0.73 | 0.594706 |
Target: 5'- aCAUCCCUGCcuACGGGCACC-UGgcAGGGu -3' miRNA: 3'- -GUAGGGGCGc-UGUCUGUGGuAC--UCCC- -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 42949 | 0.7 | 0.743959 |
Target: 5'- aCGUCCgggCGCGGCA-ACGCCucgGAGGGg -3' miRNA: 3'- -GUAGGg--GCGCUGUcUGUGGua-CUCCC- -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 44615 | 0.7 | 0.734352 |
Target: 5'- -uUCCUgGUGGCGGACAUCAccgcggccGAGGGa -3' miRNA: 3'- guAGGGgCGCUGUCUGUGGUa-------CUCCC- -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 49763 | 0.69 | 0.772176 |
Target: 5'- --aCCCCGCGGCuauAGcACACUuggagGAGGGc -3' miRNA: 3'- guaGGGGCGCUG---UC-UGUGGua---CUCCC- -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 50148 | 0.69 | 0.808061 |
Target: 5'- -uUCCCUGCGAU-GGCGCac-GAGGGc -3' miRNA: 3'- guAGGGGCGCUGuCUGUGguaCUCCC- -5' |
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24629 | 5' | -56.3 | NC_005264.1 | + | 62295 | 0.66 | 0.922085 |
Target: 5'- aCAUgCCCGCGAgcgucguccggacUAGACccGCCcugucgucuAUGAGGGc -3' miRNA: 3'- -GUAgGGGCGCU-------------GUCUG--UGG---------UACUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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