miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24644 3' -58.2 NC_005264.1 + 88354 1.07 0.002284
Target:  5'- cCGCGCAGCCACGUAGACAUGGGGCUAg -3'
miRNA:   3'- -GCGCGUCGGUGCAUCUGUACCCCGAU- -5'
24644 3' -58.2 NC_005264.1 + 48377 0.81 0.141631
Target:  5'- gGCGCAGCCG-GUAGAC-UGGGGCg- -3'
miRNA:   3'- gCGCGUCGGUgCAUCUGuACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 123731 0.79 0.186972
Target:  5'- aGCGCAGCaaCACGUAGGCGUGacGGGCa- -3'
miRNA:   3'- gCGCGUCG--GUGCAUCUGUAC--CCCGau -5'
24644 3' -58.2 NC_005264.1 + 132771 0.77 0.244628
Target:  5'- gGCGCGGCgGCGccGACGaGGGGCUAa -3'
miRNA:   3'- gCGCGUCGgUGCauCUGUaCCCCGAU- -5'
24644 3' -58.2 NC_005264.1 + 59805 0.75 0.302174
Target:  5'- cCGCGgAGCCguACGUAGACGUGaGGGUc- -3'
miRNA:   3'- -GCGCgUCGG--UGCAUCUGUAC-CCCGau -5'
24644 3' -58.2 NC_005264.1 + 54418 0.73 0.42874
Target:  5'- uGCGCGGCgCGCcgacuaGGGCGUGGGGUUGu -3'
miRNA:   3'- gCGCGUCG-GUGca----UCUGUACCCCGAU- -5'
24644 3' -58.2 NC_005264.1 + 142967 0.72 0.446635
Target:  5'- aGCGCGGCCGCGgcggucucucGGGCAUGaggcGGGCg- -3'
miRNA:   3'- gCGCGUCGGUGCa---------UCUGUAC----CCCGau -5'
24644 3' -58.2 NC_005264.1 + 99167 0.71 0.531808
Target:  5'- uCGCGgGggacgucacucGCgGCGUAGACGUGGGGUc- -3'
miRNA:   3'- -GCGCgU-----------CGgUGCAUCUGUACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 123245 0.71 0.541661
Target:  5'- gCGCGCAGCUcCGUcuGGCG-GGGGCa- -3'
miRNA:   3'- -GCGCGUCGGuGCAu-CUGUaCCCCGau -5'
24644 3' -58.2 NC_005264.1 + 6159 0.71 0.541661
Target:  5'- uCGCGCA-UCGCGUGcacGAUGUGGGGCa- -3'
miRNA:   3'- -GCGCGUcGGUGCAU---CUGUACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 125186 0.71 0.541661
Target:  5'- uCGCGCA-UCGCGUGcacGAUGUGGGGCa- -3'
miRNA:   3'- -GCGCGUcGGUGCAU---CUGUACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 28705 0.7 0.551574
Target:  5'- uCGCGCGGUUAUGUcu-UAUGGGGCUc -3'
miRNA:   3'- -GCGCGUCGGUGCAucuGUACCCCGAu -5'
24644 3' -58.2 NC_005264.1 + 68608 0.69 0.629255
Target:  5'- uCGUGUGGCCGCGUAGcgcaucguagcaacGCGUGGuaGGCg- -3'
miRNA:   3'- -GCGCGUCGGUGCAUC--------------UGUACC--CCGau -5'
24644 3' -58.2 NC_005264.1 + 142789 0.69 0.632306
Target:  5'- aCGCGgGGCCGCGUGgcGACAUGccaGGCc- -3'
miRNA:   3'- -GCGCgUCGGUGCAU--CUGUACc--CCGau -5'
24644 3' -58.2 NC_005264.1 + 103618 0.69 0.632306
Target:  5'- cCGCGaauuugcucgaGGCCAUGUGGGCcuuguUGGGGCc- -3'
miRNA:   3'- -GCGCg----------UCGGUGCAUCUGu----ACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 69609 0.69 0.642473
Target:  5'- gGCGCcGCCcgGCGUgagaacgacAGGCuauUGGGGCUGg -3'
miRNA:   3'- gCGCGuCGG--UGCA---------UCUGu--ACCCCGAU- -5'
24644 3' -58.2 NC_005264.1 + 150864 0.69 0.662776
Target:  5'- cCGUGCcGCgCGCGgcaAGACAUGGGcGCg- -3'
miRNA:   3'- -GCGCGuCG-GUGCa--UCUGUACCC-CGau -5'
24644 3' -58.2 NC_005264.1 + 31838 0.69 0.662776
Target:  5'- cCGUGCcGCgCGCGgcaAGACAUGGGcGCg- -3'
miRNA:   3'- -GCGCGuCG-GUGCa--UCUGUACCC-CGau -5'
24644 3' -58.2 NC_005264.1 + 154200 0.68 0.672895
Target:  5'- uCGCGC-GaaACGUAGACGUGGcGGUg- -3'
miRNA:   3'- -GCGCGuCggUGCAUCUGUACC-CCGau -5'
24644 3' -58.2 NC_005264.1 + 5287 0.68 0.672895
Target:  5'- gGCGgGGCgGCGgcuGACccGUGGGGCg- -3'
miRNA:   3'- gCGCgUCGgUGCau-CUG--UACCCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.