Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24644 | 3' | -58.2 | NC_005264.1 | + | 88354 | 1.07 | 0.002284 |
Target: 5'- cCGCGCAGCCACGUAGACAUGGGGCUAg -3' miRNA: 3'- -GCGCGUCGGUGCAUCUGUACCCCGAU- -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 35160 | 0.66 | 0.789237 |
Target: 5'- cCGCGguGUguCugGUGGGCAagguucGGGGCg- -3' miRNA: 3'- -GCGCguCG--GugCAUCUGUa-----CCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 87368 | 0.66 | 0.807088 |
Target: 5'- aCGCGCgacuGGCCACcccAGGCGgacuuUGGGGCc- -3' miRNA: 3'- -GCGCG----UCGGUGca-UCUGU-----ACCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 45233 | 0.66 | 0.824313 |
Target: 5'- aGCGCAGC---GUAGGCAUGGccGCUGa -3' miRNA: 3'- gCGCGUCGgugCAUCUGUACCc-CGAU- -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 68608 | 0.69 | 0.629255 |
Target: 5'- uCGUGUGGCCGCGUAGcgcaucguagcaacGCGUGGuaGGCg- -3' miRNA: 3'- -GCGCGUCGGUGCAUC--------------UGUACC--CCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 69609 | 0.69 | 0.642473 |
Target: 5'- gGCGCcGCCcgGCGUgagaacgacAGGCuauUGGGGCUGg -3' miRNA: 3'- gCGCGuCGG--UGCA---------UCUGu--ACCCCGAU- -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 124314 | 0.68 | 0.672895 |
Target: 5'- gGCGgGGCgGCGgcuGACccGUGGGGCg- -3' miRNA: 3'- gCGCgUCGgUGCau-CUG--UACCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 19107 | 0.68 | 0.693026 |
Target: 5'- -cCGCGGCgGCGcggAGACGagcacuacgaUGGGGCUAc -3' miRNA: 3'- gcGCGUCGgUGCa--UCUGU----------ACCCCGAU- -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 118119 | 0.68 | 0.70302 |
Target: 5'- uCGCuGUAuCCGCGUAGGCcgaGUGGGGUa- -3' miRNA: 3'- -GCG-CGUcGGUGCAUCUG---UACCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 86160 | 0.66 | 0.789237 |
Target: 5'- gGCGaCAGCCugGUGGcCGUGGaaGCa- -3' miRNA: 3'- gCGC-GUCGGugCAUCuGUACCc-CGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 14890 | 0.67 | 0.732614 |
Target: 5'- aCGCGCGuCCAUGcuuaUGGACGUGGaGCUGc -3' miRNA: 3'- -GCGCGUcGGUGC----AUCUGUACCcCGAU- -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 162615 | 0.68 | 0.70302 |
Target: 5'- gGCGcCAGgCACGgaaagcGAUcgGGGGCUAc -3' miRNA: 3'- gCGC-GUCgGUGCau----CUGuaCCCCGAU- -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 59805 | 0.75 | 0.302174 |
Target: 5'- cCGCGgAGCCguACGUAGACGUGaGGGUc- -3' miRNA: 3'- -GCGCgUCGG--UGCAUCUGUAC-CCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 126960 | 0.67 | 0.770827 |
Target: 5'- -aCGCuGCCGCG-AGACGagccggaGGGGCUAc -3' miRNA: 3'- gcGCGuCGGUGCaUCUGUa------CCCCGAU- -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 54418 | 0.73 | 0.42874 |
Target: 5'- uGCGCGGCgCGCcgacuaGGGCGUGGGGUUGu -3' miRNA: 3'- gCGCGUCG-GUGca----UCUGUACCCCGAU- -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 26896 | 0.68 | 0.693026 |
Target: 5'- aCGCGagaAGUCACGUGGu--UGGGGUa- -3' miRNA: 3'- -GCGCg--UCGGUGCAUCuguACCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 10070 | 0.67 | 0.780097 |
Target: 5'- -cUGCAGCCGCGgcGgaaucucccGCcgGGGGCa- -3' miRNA: 3'- gcGCGUCGGUGCauC---------UGuaCCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 55259 | 0.66 | 0.807088 |
Target: 5'- uGCGaCcGCCACGaAGAgcUGGGGCg- -3' miRNA: 3'- gCGC-GuCGGUGCaUCUguACCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 125186 | 0.71 | 0.541661 |
Target: 5'- uCGCGCA-UCGCGUGcacGAUGUGGGGCa- -3' miRNA: 3'- -GCGCGUcGGUGCAU---CUGUACCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 150864 | 0.69 | 0.662776 |
Target: 5'- cCGUGCcGCgCGCGgcaAGACAUGGGcGCg- -3' miRNA: 3'- -GCGCGuCG-GUGCa--UCUGUACCC-CGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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