miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24644 3' -58.2 NC_005264.1 + 5287 0.68 0.672895
Target:  5'- gGCGgGGCgGCGgcuGACccGUGGGGCg- -3'
miRNA:   3'- gCGCgUCGgUGCau-CUG--UACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 6159 0.71 0.541661
Target:  5'- uCGCGCA-UCGCGUGcacGAUGUGGGGCa- -3'
miRNA:   3'- -GCGCGUcGGUGCAU---CUGUACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 7934 0.67 0.770827
Target:  5'- -aCGCuGCCGCG-AGACGagccggaGGGGCUAc -3'
miRNA:   3'- gcGCGuCGGUGCaUCUGUa------CCCCGAU- -5'
24644 3' -58.2 NC_005264.1 + 8065 0.66 0.815783
Target:  5'- aCGuCGCGGCCGCaGUcGGGCAcgGGcGGCg- -3'
miRNA:   3'- -GC-GCGUCGGUG-CA-UCUGUa-CC-CCGau -5'
24644 3' -58.2 NC_005264.1 + 10070 0.67 0.780097
Target:  5'- -cUGCAGCCGCGgcGgaaucucccGCcgGGGGCa- -3'
miRNA:   3'- gcGCGUCGGUGCauC---------UGuaCCCCGau -5'
24644 3' -58.2 NC_005264.1 + 14890 0.67 0.732614
Target:  5'- aCGCGCGuCCAUGcuuaUGGACGUGGaGCUGc -3'
miRNA:   3'- -GCGCGUcGGUGC----AUCUGUACCcCGAU- -5'
24644 3' -58.2 NC_005264.1 + 19107 0.68 0.693026
Target:  5'- -cCGCGGCgGCGcggAGACGagcacuacgaUGGGGCUAc -3'
miRNA:   3'- gcGCGUCGgUGCa--UCUGU----------ACCCCGAU- -5'
24644 3' -58.2 NC_005264.1 + 23943 0.66 0.815783
Target:  5'- uCGCGCcGCCGaugGGuAUGUGGGGCg- -3'
miRNA:   3'- -GCGCGuCGGUgcaUC-UGUACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 26896 0.68 0.693026
Target:  5'- aCGCGagaAGUCACGUGGu--UGGGGUa- -3'
miRNA:   3'- -GCGCg--UCGGUGCAUCuguACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 28705 0.7 0.551574
Target:  5'- uCGCGCGGUUAUGUcu-UAUGGGGCUc -3'
miRNA:   3'- -GCGCGUCGGUGCAucuGUACCCCGAu -5'
24644 3' -58.2 NC_005264.1 + 31838 0.69 0.662776
Target:  5'- cCGUGCcGCgCGCGgcaAGACAUGGGcGCg- -3'
miRNA:   3'- -GCGCGuCG-GUGCa--UCUGUACCC-CGau -5'
24644 3' -58.2 NC_005264.1 + 35160 0.66 0.789237
Target:  5'- cCGCGguGUguCugGUGGGCAagguucGGGGCg- -3'
miRNA:   3'- -GCGCguCG--GugCAUCUGUa-----CCCCGau -5'
24644 3' -58.2 NC_005264.1 + 43588 0.68 0.70302
Target:  5'- gGCGcCAGgCACGgaaagcGAUcgGGGGCUAc -3'
miRNA:   3'- gCGC-GUCgGUGCau----CUGuaCCCCGAU- -5'
24644 3' -58.2 NC_005264.1 + 44875 0.67 0.777329
Target:  5'- -cUGCAGCCugGggAGGCGggcccgucgucgucUGGGGCg- -3'
miRNA:   3'- gcGCGUCGGugCa-UCUGU--------------ACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 45233 0.66 0.824313
Target:  5'- aGCGCAGC---GUAGGCAUGGccGCUGa -3'
miRNA:   3'- gCGCGUCGgugCAUCUGUACCc-CGAU- -5'
24644 3' -58.2 NC_005264.1 + 48377 0.81 0.141631
Target:  5'- gGCGCAGCCG-GUAGAC-UGGGGCg- -3'
miRNA:   3'- gCGCGUCGGUgCAUCUGuACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 51660 0.67 0.761434
Target:  5'- aGCGCuGCCacucGCGUAGACccGGuGGUa- -3'
miRNA:   3'- gCGCGuCGG----UGCAUCUGuaCC-CCGau -5'
24644 3' -58.2 NC_005264.1 + 52591 0.66 0.798236
Target:  5'- aCGCGC-GCUACGUGGAUu---GGCUGa -3'
miRNA:   3'- -GCGCGuCGGUGCAUCUGuaccCCGAU- -5'
24644 3' -58.2 NC_005264.1 + 54418 0.73 0.42874
Target:  5'- uGCGCGGCgCGCcgacuaGGGCGUGGGGUUGu -3'
miRNA:   3'- gCGCGUCG-GUGca----UCUGUACCCCGAU- -5'
24644 3' -58.2 NC_005264.1 + 55259 0.66 0.807088
Target:  5'- uGCGaCcGCCACGaAGAgcUGGGGCg- -3'
miRNA:   3'- gCGC-GuCGGUGCaUCUguACCCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.