miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24654 5' -53.1 NC_005264.1 + 43165 0.66 0.976494
Target:  5'- gGggGGGGCGCGUGAGccucuaucgcgcUGCCuGcGACg -3'
miRNA:   3'- -CuaCUCCGCGCGCUC------------AUGGuCuUUGa -5'
24654 5' -53.1 NC_005264.1 + 74825 0.66 0.976494
Target:  5'- --cGAGGaaCGUGGGcACCAGggGCa -3'
miRNA:   3'- cuaCUCCgcGCGCUCaUGGUCuuUGa -5'
24654 5' -53.1 NC_005264.1 + 162192 0.66 0.976494
Target:  5'- gGggGGGGCGCGUGAGccucuaucgcgcUGCCuGcGACg -3'
miRNA:   3'- -CuaCUCCGCGCGCUC------------AUGGuCuUUGa -5'
24654 5' -53.1 NC_005264.1 + 96894 0.66 0.973887
Target:  5'- cAUGGcGGCGCGCGAGgGCgCGGcAAAUc -3'
miRNA:   3'- cUACU-CCGCGCGCUCaUG-GUC-UUUGa -5'
24654 5' -53.1 NC_005264.1 + 85828 0.66 0.973887
Target:  5'- --aGAaGCGCGCGcucAGUACCGGGucuuGCg -3'
miRNA:   3'- cuaCUcCGCGCGC---UCAUGGUCUu---UGa -5'
24654 5' -53.1 NC_005264.1 + 75324 0.66 0.971076
Target:  5'- -cUGccGCGCGCcAGUGCCGGuAACa -3'
miRNA:   3'- cuACucCGCGCGcUCAUGGUCuUUGa -5'
24654 5' -53.1 NC_005264.1 + 45774 0.66 0.971076
Target:  5'- --cGGGGCGCGCgGAGUggggagucgagAUCGGAGuCUg -3'
miRNA:   3'- cuaCUCCGCGCG-CUCA-----------UGGUCUUuGA- -5'
24654 5' -53.1 NC_005264.1 + 146319 0.66 0.971076
Target:  5'- -uUGAGGCGUGCuuGUACCAu----- -3'
miRNA:   3'- cuACUCCGCGCGcuCAUGGUcuuuga -5'
24654 5' -53.1 NC_005264.1 + 124333 0.66 0.964814
Target:  5'- cGUGGGGCGgGCGAcuggcgggaGUACgGGgAGACg -3'
miRNA:   3'- cUACUCCGCgCGCU---------CAUGgUC-UUUGa -5'
24654 5' -53.1 NC_005264.1 + 5306 0.66 0.964814
Target:  5'- cGUGGGGCGgGCGAcuggcgggaGUACgGGgAGACg -3'
miRNA:   3'- cUACUCCGCgCGCU---------CAUGgUC-UUUGa -5'
24654 5' -53.1 NC_005264.1 + 81902 0.66 0.964814
Target:  5'- cGAUG-GGCGgGCGA--GCCAGcaGAACg -3'
miRNA:   3'- -CUACuCCGCgCGCUcaUGGUC--UUUGa -5'
24654 5' -53.1 NC_005264.1 + 79434 0.66 0.964814
Target:  5'- cGUG-GGCgGUGCGGGgucuCCGGggGCa -3'
miRNA:   3'- cUACuCCG-CGCGCUCau--GGUCuuUGa -5'
24654 5' -53.1 NC_005264.1 + 16770 0.67 0.961351
Target:  5'- cGcgGGGGCGCGCu-GUucggGCCGGAcGCa -3'
miRNA:   3'- -CuaCUCCGCGCGcuCA----UGGUCUuUGa -5'
24654 5' -53.1 NC_005264.1 + 16276 0.67 0.961351
Target:  5'- -cUGAGGCGCG-----GCCAGAAACc -3'
miRNA:   3'- cuACUCCGCGCgcucaUGGUCUUUGa -5'
24654 5' -53.1 NC_005264.1 + 80204 0.67 0.953733
Target:  5'- --aGAGGCGCGgGAcguGUGugAGAAGCUu -3'
miRNA:   3'- cuaCUCCGCGCgCU---CAUggUCUUUGA- -5'
24654 5' -53.1 NC_005264.1 + 94479 0.67 0.94516
Target:  5'- --cGAGGuCGUGCGc--ACCAGGAACa -3'
miRNA:   3'- cuaCUCC-GCGCGCucaUGGUCUUUGa -5'
24654 5' -53.1 NC_005264.1 + 97213 0.67 0.94516
Target:  5'- cGGUGc-GCGCGCGGGUACCcacGAGCc -3'
miRNA:   3'- -CUACucCGCGCGCUCAUGGuc-UUUGa -5'
24654 5' -53.1 NC_005264.1 + 130269 0.67 0.94516
Target:  5'- ---cGGGUGCGCGAcGUugCGGcgGCUa -3'
miRNA:   3'- cuacUCCGCGCGCU-CAugGUCuuUGA- -5'
24654 5' -53.1 NC_005264.1 + 64270 0.67 0.94516
Target:  5'- cGGUGAGGCuggcuaCGCGGGUGCC-GAGuaucGCg -3'
miRNA:   3'- -CUACUCCGc-----GCGCUCAUGGuCUU----UGa -5'
24654 5' -53.1 NC_005264.1 + 95771 0.67 0.940508
Target:  5'- --cGcGGCGUGCGAGUAcucguuCCAGgcGCUu -3'
miRNA:   3'- cuaCuCCGCGCGCUCAU------GGUCuuUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.