Results 21 - 38 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 74825 | 0.66 | 0.976494 |
Target: 5'- --cGAGGaaCGUGGGcACCAGggGCa -3' miRNA: 3'- cuaCUCCgcGCGCUCaUGGUCuuUGa -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 96894 | 0.66 | 0.973887 |
Target: 5'- cAUGGcGGCGCGCGAGgGCgCGGcAAAUc -3' miRNA: 3'- cUACU-CCGCGCGCUCaUG-GUC-UUUGa -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 85828 | 0.66 | 0.973887 |
Target: 5'- --aGAaGCGCGCGcucAGUACCGGGucuuGCg -3' miRNA: 3'- cuaCUcCGCGCGC---UCAUGGUCUu---UGa -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 75324 | 0.66 | 0.971076 |
Target: 5'- -cUGccGCGCGCcAGUGCCGGuAACa -3' miRNA: 3'- cuACucCGCGCGcUCAUGGUCuUUGa -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 79434 | 0.66 | 0.964814 |
Target: 5'- cGUG-GGCgGUGCGGGgucuCCGGggGCa -3' miRNA: 3'- cUACuCCG-CGCGCUCau--GGUCuuUGa -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 81902 | 0.66 | 0.964814 |
Target: 5'- cGAUG-GGCGgGCGA--GCCAGcaGAACg -3' miRNA: 3'- -CUACuCCGCgCGCUcaUGGUC--UUUGa -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 5306 | 0.66 | 0.964814 |
Target: 5'- cGUGGGGCGgGCGAcuggcgggaGUACgGGgAGACg -3' miRNA: 3'- cUACUCCGCgCGCU---------CAUGgUC-UUUGa -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 80204 | 0.67 | 0.953733 |
Target: 5'- --aGAGGCGCGgGAcguGUGugAGAAGCUu -3' miRNA: 3'- cuaCUCCGCGCgCU---CAUggUCUUUGA- -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 130269 | 0.67 | 0.94516 |
Target: 5'- ---cGGGUGCGCGAcGUugCGGcgGCUa -3' miRNA: 3'- cuacUCCGCGCGCU-CAugGUCuuUGA- -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 97213 | 0.67 | 0.94516 |
Target: 5'- cGGUGc-GCGCGCGGGUACCcacGAGCc -3' miRNA: 3'- -CUACucCGCGCGCUCAUGGuc-UUUGa -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 94479 | 0.67 | 0.94516 |
Target: 5'- --cGAGGuCGUGCGc--ACCAGGAACa -3' miRNA: 3'- cuaCUCC-GCGCGCucaUGGUCUUUGa -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 95771 | 0.67 | 0.940508 |
Target: 5'- --cGcGGCGUGCGAGUAcucguuCCAGgcGCUu -3' miRNA: 3'- cuaCuCCGCGCGCUCAU------GGUCuuUGA- -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 150797 | 0.68 | 0.913514 |
Target: 5'- --gGGGGCGUGUGGGg--CAGGAGCg -3' miRNA: 3'- cuaCUCCGCGCGCUCaugGUCUUUGa -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 44535 | 0.69 | 0.894342 |
Target: 5'- --cGAcGCGCGCGAGUACaucaccGAGACg -3' miRNA: 3'- cuaCUcCGCGCGCUCAUGgu----CUUUGa -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 54577 | 0.7 | 0.841458 |
Target: 5'- cGUGGGGCGCGaCGGGU--CGGAGAUg -3' miRNA: 3'- cUACUCCGCGC-GCUCAugGUCUUUGa -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 106247 | 0.7 | 0.833053 |
Target: 5'- aGAUGGGcCGCGCGuAGcGCCAGAAAa- -3' miRNA: 3'- -CUACUCcGCGCGC-UCaUGGUCUUUga -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 48392 | 0.71 | 0.815679 |
Target: 5'- -cUGGGGCGUcggGCGGcgGCCAGGAGCg -3' miRNA: 3'- cuACUCCGCG---CGCUcaUGGUCUUUGa -5' |
|||||||
24654 | 5' | -53.1 | NC_005264.1 | + | 43165 | 0.66 | 0.976494 |
Target: 5'- gGggGGGGCGCGUGAGccucuaucgcgcUGCCuGcGACg -3' miRNA: 3'- -CuaCUCCGCGCGCUC------------AUGGuCuUUGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home