miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 31605 0.73 0.349207
Target:  5'- uCUGGCGaGGCGGCGCGcaUCGCCcuGCg -3'
miRNA:   3'- -GGCUGC-CCGCCGCGCacGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 150632 0.73 0.349207
Target:  5'- uCUGGCGaGGCGGCGCGcaUCGCCcuGCg -3'
miRNA:   3'- -GGCUGC-CCGCCGCGCacGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 90385 0.72 0.379769
Target:  5'- uCCGACcGGCGGCGC---CCGCCGAuACa -3'
miRNA:   3'- -GGCUGcCCGCCGCGcacGGCGGUU-UG- -5'
24658 3' -61.2 NC_005264.1 + 68259 0.72 0.379769
Target:  5'- gCCG-CGGGCGGCcugcuGC-UGCCGCCucuuuGCg -3'
miRNA:   3'- -GGCuGCCCGCCG-----CGcACGGCGGuu---UG- -5'
24658 3' -61.2 NC_005264.1 + 119593 0.72 0.379769
Target:  5'- aCGAUGaaccucaguccaGGCGGCaCGUGCCGCCu-GCa -3'
miRNA:   3'- gGCUGC------------CCGCCGcGCACGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 83117 0.72 0.385298
Target:  5'- gCCGACGGGCgccaaggccgcggaGGCGCGU-CUGCCc--- -3'
miRNA:   3'- -GGCUGCCCG--------------CCGCGCAcGGCGGuuug -5'
24658 3' -61.2 NC_005264.1 + 3670 0.72 0.387684
Target:  5'- aCGAUGGGCGGC-CGUcucgGCgGCgAGACg -3'
miRNA:   3'- gGCUGCCCGCCGcGCA----CGgCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 122697 0.72 0.387684
Target:  5'- aCGAUGGGCGGC-CGUcucgGCgGCgAGACg -3'
miRNA:   3'- gGCUGCCCGCCGcGCA----CGgCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 48937 0.72 0.395707
Target:  5'- cCCGAUGGGCacuuGUGCGgGCCGCUgcGCu -3'
miRNA:   3'- -GGCUGCCCGc---CGCGCaCGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 66495 0.72 0.395707
Target:  5'- uUGGCGGGCuGCGCG-GCgCGCUcGACg -3'
miRNA:   3'- gGCUGCCCGcCGCGCaCG-GCGGuUUG- -5'
24658 3' -61.2 NC_005264.1 + 52970 0.72 0.401387
Target:  5'- gCGGCGgugcugcgaacucaGGCGGUGCGcgaGCaCGCCAAACu -3'
miRNA:   3'- gGCUGC--------------CCGCCGCGCa--CG-GCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 45650 0.72 0.403836
Target:  5'- aCGACGcGGCGGCuaG-G-CGCCAAGCg -3'
miRNA:   3'- gGCUGC-CCGCCGcgCaCgGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 43234 0.71 0.420408
Target:  5'- --uGCaGGCGGCaCGUGCCGCCuGGACu -3'
miRNA:   3'- ggcUGcCCGCCGcGCACGGCGG-UUUG- -5'
24658 3' -61.2 NC_005264.1 + 45403 0.71 0.428846
Target:  5'- aCGAUggaGGGCGGCGCccUGCgCGCCGcGACa -3'
miRNA:   3'- gGCUG---CCCGCCGCGc-ACG-GCGGU-UUG- -5'
24658 3' -61.2 NC_005264.1 + 16766 0.71 0.437384
Target:  5'- cCCGcGCGGG-GGCGCGcUGUUcggGCCGGACg -3'
miRNA:   3'- -GGC-UGCCCgCCGCGC-ACGG---CGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 103137 0.71 0.454746
Target:  5'- gCCGcCGGcGCGGCGCGcGgCGCaAAGCg -3'
miRNA:   3'- -GGCuGCC-CGCCGCGCaCgGCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 58365 0.7 0.463566
Target:  5'- uCUGGCGGGgcCGGCGCGauaUGC-GCCGGAUu -3'
miRNA:   3'- -GGCUGCCC--GCCGCGC---ACGgCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 146671 0.7 0.463566
Target:  5'- aCCGACcuccgcgcaGGGCGGCau-UGCCGCCcuGCg -3'
miRNA:   3'- -GGCUG---------CCCGCCGcgcACGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 72251 0.7 0.463566
Target:  5'- aCCG-CGGGCaaGGCGCGaccUGCCGCg---- -3'
miRNA:   3'- -GGCuGCCCG--CCGCGC---ACGGCGguuug -5'
24658 3' -61.2 NC_005264.1 + 131639 0.7 0.469793
Target:  5'- -aGAUGGucacgccucggucuGCGGUGCccGCCGCCAGACc -3'
miRNA:   3'- ggCUGCC--------------CGCCGCGcaCGGCGGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.