Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24673 | 5' | -60.7 | NC_005264.1 | + | 106136 | 1.06 | 0.001535 |
Target: 5'- aUGGCAGCUUGUCGCGCGGCGAGCCUUa -3' miRNA: 3'- -ACCGUCGAACAGCGCGCCGCUCGGAA- -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 145922 | 0.74 | 0.255724 |
Target: 5'- cGGCGGCggGUCaGCGCGGgcaUGGGCCUc -3' miRNA: 3'- aCCGUCGaaCAG-CGCGCC---GCUCGGAa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 37580 | 0.73 | 0.293969 |
Target: 5'- aGGCGGCaaGUCuCGCGGCG-GCCg- -3' miRNA: 3'- aCCGUCGaaCAGcGCGCCGCuCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 156607 | 0.73 | 0.293969 |
Target: 5'- aGGCGGCaaGUCuCGCGGCG-GCCg- -3' miRNA: 3'- aCCGUCGaaCAGcGCGCCGCuCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 76141 | 0.72 | 0.336529 |
Target: 5'- cGGCGGCaaagaccgCGCGCGGCGAGUa-- -3' miRNA: 3'- aCCGUCGaaca----GCGCGCCGCUCGgaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 25553 | 0.71 | 0.399132 |
Target: 5'- aGGC-GCUUGUCGCGCucguccaGGgGAGCuCUg -3' miRNA: 3'- aCCGuCGAACAGCGCG-------CCgCUCG-GAa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 4141 | 0.7 | 0.434429 |
Target: 5'- cGGCcGCUUGUCGCGauGCuuGCCg- -3' miRNA: 3'- aCCGuCGAACAGCGCgcCGcuCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 74301 | 0.7 | 0.434429 |
Target: 5'- cGGCGGUcUGgCGCGCGGCauGGCCa- -3' miRNA: 3'- aCCGUCGaACaGCGCGCCGc-UCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 123168 | 0.7 | 0.434429 |
Target: 5'- cGGCcGCUUGUCGCGauGCuuGCCg- -3' miRNA: 3'- aCCGuCGAACAGCGCgcCGcuCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 98535 | 0.7 | 0.443309 |
Target: 5'- uUGGCAGCggcaaCGCGCuGUGGGCCg- -3' miRNA: 3'- -ACCGUCGaaca-GCGCGcCGCUCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 42024 | 0.7 | 0.45229 |
Target: 5'- cGGCGGCagUGUCGaCGCGcacGCG-GCCUa -3' miRNA: 3'- aCCGUCGa-ACAGC-GCGC---CGCuCGGAa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 146322 | 0.69 | 0.479813 |
Target: 5'- aGGCGuGCUUGUaccauccgucUGCGcCGGCGuGCCUc -3' miRNA: 3'- aCCGU-CGAACA----------GCGC-GCCGCuCGGAa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 81895 | 0.69 | 0.479813 |
Target: 5'- uUGGCGGCgaUGg-GCG-GGCGAGCCa- -3' miRNA: 3'- -ACCGUCGa-ACagCGCgCCGCUCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 27631 | 0.69 | 0.479813 |
Target: 5'- aGGCGGCUgGUCGCGCGaacuCGuuuGGCCa- -3' miRNA: 3'- aCCGUCGAaCAGCGCGCc---GC---UCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 132102 | 0.69 | 0.489168 |
Target: 5'- cUGaGCGGCUcuUUGCGCGGgaaGAGCCUc -3' miRNA: 3'- -AC-CGUCGAacAGCGCGCCg--CUCGGAa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 98678 | 0.69 | 0.516762 |
Target: 5'- cUGGCGgcGCUUGcacaccggccggaUCGCggcgccGUGGCGAGCCUg -3' miRNA: 3'- -ACCGU--CGAAC-------------AGCG------CGCCGCUCGGAa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 96211 | 0.69 | 0.517725 |
Target: 5'- uUGGCAGCUUGccUCGgGCcGCGAcggcGCCg- -3' miRNA: 3'- -ACCGUCGAAC--AGCgCGcCGCU----CGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 48385 | 0.69 | 0.517725 |
Target: 5'- cGGUAGaCUggggcGUCGgGCGGCG-GCCa- -3' miRNA: 3'- aCCGUC-GAa----CAGCgCGCCGCuCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 5294 | 0.68 | 0.527393 |
Target: 5'- cGGCGGCUgaccCGUGgGGCGGGCg-- -3' miRNA: 3'- aCCGUCGAaca-GCGCgCCGCUCGgaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 124321 | 0.68 | 0.527393 |
Target: 5'- cGGCGGCUgaccCGUGgGGCGGGCg-- -3' miRNA: 3'- aCCGUCGAaca-GCGCgCCGCUCGgaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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