miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24673 5' -60.7 NC_005264.1 + 106136 1.06 0.001535
Target:  5'- aUGGCAGCUUGUCGCGCGGCGAGCCUUa -3'
miRNA:   3'- -ACCGUCGAACAGCGCGCCGCUCGGAA- -5'
24673 5' -60.7 NC_005264.1 + 53550 0.67 0.6268
Target:  5'- aGGCGGUgacgaaagucgUUGUCGCGCagagcGGCGcGGCUUg -3'
miRNA:   3'- aCCGUCG-----------AACAGCGCG-----CCGC-UCGGAa -5'
24673 5' -60.7 NC_005264.1 + 150539 0.67 0.636876
Target:  5'- aGGCGGCUccagGcUCGgGCGGggaGGGCCg- -3'
miRNA:   3'- aCCGUCGAa---C-AGCgCGCCg--CUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 54396 0.66 0.696977
Target:  5'- cGGauaauaaagaAGUcgUUGUUGCGCGGCGcGCCg- -3'
miRNA:   3'- aCCg---------UCG--AACAGCGCGCCGCuCGGaa -5'
24673 5' -60.7 NC_005264.1 + 123168 0.7 0.434429
Target:  5'- cGGCcGCUUGUCGCGauGCuuGCCg- -3'
miRNA:   3'- aCCGuCGAACAGCGCgcCGcuCGGaa -5'
24673 5' -60.7 NC_005264.1 + 42024 0.7 0.45229
Target:  5'- cGGCGGCagUGUCGaCGCGcacGCG-GCCUa -3'
miRNA:   3'- aCCGUCGa-ACAGC-GCGC---CGCuCGGAa -5'
24673 5' -60.7 NC_005264.1 + 124321 0.68 0.527393
Target:  5'- cGGCGGCUgaccCGUGgGGCGGGCg-- -3'
miRNA:   3'- aCCGUCGAaca-GCGCgCCGCUCGgaa -5'
24673 5' -60.7 NC_005264.1 + 42567 0.68 0.537127
Target:  5'- cGGCAGcCUUGcCG-GaGGCGAGCCa- -3'
miRNA:   3'- aCCGUC-GAACaGCgCgCCGCUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 46455 0.68 0.566676
Target:  5'- -uGCGGCUU-UUGCGCGGCGcucuuuGCCUg -3'
miRNA:   3'- acCGUCGAAcAGCGCGCCGCu-----CGGAa -5'
24673 5' -60.7 NC_005264.1 + 149422 0.67 0.606667
Target:  5'- cGGCGGCggcgGUCGCGCgccGGUgcggaGAGCUg- -3'
miRNA:   3'- aCCGUCGaa--CAGCGCG---CCG-----CUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 57489 0.67 0.586608
Target:  5'- cGGCGGCgaagaugcUGgcgCGCGCGGCG-GCg-- -3'
miRNA:   3'- aCCGUCGa-------ACa--GCGCGCCGCuCGgaa -5'
24673 5' -60.7 NC_005264.1 + 17361 0.68 0.556774
Target:  5'- cGGCAGCUgg-CG-GCGGCGcGGUCUg -3'
miRNA:   3'- aCCGUCGAacaGCgCGCCGC-UCGGAa -5'
24673 5' -60.7 NC_005264.1 + 145922 0.74 0.255724
Target:  5'- cGGCGGCggGUCaGCGCGGgcaUGGGCCUc -3'
miRNA:   3'- aCCGUCGaaCAG-CGCGCC---GCUCGGAa -5'
24673 5' -60.7 NC_005264.1 + 56242 0.67 0.596625
Target:  5'- cGcGCGGCUuuUGUCGagGUGGCGGGCa-- -3'
miRNA:   3'- aC-CGUCGA--ACAGCg-CGCCGCUCGgaa -5'
24673 5' -60.7 NC_005264.1 + 156607 0.73 0.293969
Target:  5'- aGGCGGCaaGUCuCGCGGCG-GCCg- -3'
miRNA:   3'- aCCGUCGaaCAGcGCGCCGCuCGGaa -5'
24673 5' -60.7 NC_005264.1 + 8317 0.68 0.556774
Target:  5'- cGGCAcGCUUGUuugCGCGCGGCaugugcGCCc- -3'
miRNA:   3'- aCCGU-CGAACA---GCGCGCCGcu----CGGaa -5'
24673 5' -60.7 NC_005264.1 + 91904 0.67 0.596625
Target:  5'- cGGCAGCgaugGgcggGCGCGGCGA-CCa- -3'
miRNA:   3'- aCCGUCGaa--Cag--CGCGCCGCUcGGaa -5'
24673 5' -60.7 NC_005264.1 + 107208 0.67 0.636876
Target:  5'- aGGCGGCggcgCGCGCGGUuGGCa-- -3'
miRNA:   3'- aCCGUCGaacaGCGCGCCGcUCGgaa -5'
24673 5' -60.7 NC_005264.1 + 76141 0.72 0.336529
Target:  5'- cGGCGGCaaagaccgCGCGCGGCGAGUa-- -3'
miRNA:   3'- aCCGUCGaaca----GCGCGCCGCUCGgaa -5'
24673 5' -60.7 NC_005264.1 + 146322 0.69 0.479813
Target:  5'- aGGCGuGCUUGUaccauccgucUGCGcCGGCGuGCCUc -3'
miRNA:   3'- aCCGU-CGAACA----------GCGC-GCCGCuCGGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.