Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24673 | 5' | -60.7 | NC_005264.1 | + | 4141 | 0.7 | 0.434429 |
Target: 5'- cGGCcGCUUGUCGCGauGCuuGCCg- -3' miRNA: 3'- aCCGuCGAACAGCGCgcCGcuCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 5060 | 0.66 | 0.657009 |
Target: 5'- cUGGCAGgg-GUCGCaagGCGGCcAGCCc- -3' miRNA: 3'- -ACCGUCgaaCAGCG---CGCCGcUCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 5294 | 0.68 | 0.527393 |
Target: 5'- cGGCGGCUgaccCGUGgGGCGGGCg-- -3' miRNA: 3'- aCCGUCGAaca-GCGCgCCGCUCGgaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 6302 | 0.66 | 0.687043 |
Target: 5'- --cCAGCUgcacUUGCGCGGCGAGgCUUc -3' miRNA: 3'- accGUCGAac--AGCGCGCCGCUCgGAA- -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 8317 | 0.68 | 0.556774 |
Target: 5'- cGGCAcGCUUGUuugCGCGCGGCaugugcGCCc- -3' miRNA: 3'- aCCGU-CGAACA---GCGCGCCGcu----CGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 17361 | 0.68 | 0.556774 |
Target: 5'- cGGCAGCUgg-CG-GCGGCGcGGUCUg -3' miRNA: 3'- aCCGUCGAacaGCgCGCCGC-UCGGAa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 24448 | 0.67 | 0.595622 |
Target: 5'- aUGGCccauagcgacuGGCUUGUUcCGCGGCGgauaacucgugagGGCCUa -3' miRNA: 3'- -ACCG-----------UCGAACAGcGCGCCGC-------------UCGGAa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 25553 | 0.71 | 0.399132 |
Target: 5'- aGGC-GCUUGUCGCGCucguccaGGgGAGCuCUg -3' miRNA: 3'- aCCGuCGAACAGCGCG-------CCgCUCG-GAa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 26118 | 0.67 | 0.583609 |
Target: 5'- cGcGCGGCUcGUgGCGCggcgccgagagaauGGCGAGCCc- -3' miRNA: 3'- aC-CGUCGAaCAgCGCG--------------CCGCUCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 27631 | 0.69 | 0.479813 |
Target: 5'- aGGCGGCUgGUCGCGCGaacuCGuuuGGCCa- -3' miRNA: 3'- aCCGUCGAaCAGCGCGCc---GC---UCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 29153 | 0.67 | 0.596625 |
Target: 5'- cGGCGGCaaGgacCGCGGCGAGCa-- -3' miRNA: 3'- aCCGUCGaaCagcGCGCCGCUCGgaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 30395 | 0.67 | 0.606667 |
Target: 5'- cGGCGGCggcgGUCGCGCgccGGUgcggaGAGCUg- -3' miRNA: 3'- aCCGUCGaa--CAGCGCG---CCG-----CUCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 31512 | 0.67 | 0.636876 |
Target: 5'- aGGCGGCUccagGcUCGgGCGGggaGGGCCg- -3' miRNA: 3'- aCCGUCGAa---C-AGCgCGCCg--CUCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 37580 | 0.73 | 0.293969 |
Target: 5'- aGGCGGCaaGUCuCGCGGCG-GCCg- -3' miRNA: 3'- aCCGUCGaaCAGcGCGCCGCuCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 42024 | 0.7 | 0.45229 |
Target: 5'- cGGCGGCagUGUCGaCGCGcacGCG-GCCUa -3' miRNA: 3'- aCCGUCGa-ACAGC-GCGC---CGCuCGGAa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 42567 | 0.68 | 0.537127 |
Target: 5'- cGGCAGcCUUGcCG-GaGGCGAGCCa- -3' miRNA: 3'- aCCGUC-GAACaGCgCgCCGCUCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 46455 | 0.68 | 0.566676 |
Target: 5'- -uGCGGCUU-UUGCGCGGCGcucuuuGCCUg -3' miRNA: 3'- acCGUCGAAcAGCGCGCCGCu-----CGGAa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 48385 | 0.69 | 0.517725 |
Target: 5'- cGGUAGaCUggggcGUCGgGCGGCG-GCCa- -3' miRNA: 3'- aCCGUC-GAa----CAGCgCGCCGCuCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 51785 | 0.66 | 0.696977 |
Target: 5'- cGGCGGCacuUCGUcCGGCGAGUCc- -3' miRNA: 3'- aCCGUCGaacAGCGcGCCGCUCGGaa -5' |
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24673 | 5' | -60.7 | NC_005264.1 | + | 53550 | 0.67 | 0.6268 |
Target: 5'- aGGCGGUgacgaaagucgUUGUCGCGCagagcGGCGcGGCUUg -3' miRNA: 3'- aCCGUCG-----------AACAGCGCG-----CCGC-UCGGAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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