Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24675 | 3' | -59.1 | NC_005264.1 | + | 4234 | 0.65 | 0.795756 |
Target: 5'- --cGGCGCCACGCgaagguagaucagUCCCGgCUUGcCg -3' miRNA: 3'- cacUCGCGGUGCGa------------AGGGUgGGACaG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 123261 | 0.65 | 0.795756 |
Target: 5'- --cGGCGCCACGCgaagguagaucagUCCCGgCUUGcCg -3' miRNA: 3'- cacUCGCGGUGCGa------------AGGGUgGGACaG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 114748 | 0.66 | 0.790395 |
Target: 5'- cGUGAaaGCGCaGCGCgUUCUUGCCCUG-Cg -3' miRNA: 3'- -CACU--CGCGgUGCG-AAGGGUGGGACaG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 68024 | 0.66 | 0.789497 |
Target: 5'- -gGAGCGCCAaagagcggauaacCGCUUCCgUGCCCg--- -3' miRNA: 3'- caCUCGCGGU-------------GCGAAGG-GUGGGacag -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 98032 | 0.66 | 0.78135 |
Target: 5'- cGUGAGCcCUGCGCUUCCgguGCCCaUGg- -3' miRNA: 3'- -CACUCGcGGUGCGAAGGg--UGGG-ACag -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 135797 | 0.66 | 0.76288 |
Target: 5'- gGUG-GCGCUACGCgUUUCCACaguggagagccuCCUGUg -3' miRNA: 3'- -CACuCGCGGUGCG-AAGGGUG------------GGACAg -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 52961 | 0.66 | 0.76288 |
Target: 5'- ---uGCGCCGCGggguaUUCCGCUCUGUCc -3' miRNA: 3'- cacuCGCGGUGCga---AGGGUGGGACAG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 96346 | 0.66 | 0.753471 |
Target: 5'- -cGAgcGCGCCGCGCagCCCGCCaagcauugaGUCu -3' miRNA: 3'- caCU--CGCGGUGCGaaGGGUGGga-------CAG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 103841 | 0.66 | 0.753471 |
Target: 5'- cUGAGCGCCAaGCUUCUgGgCCCgGcCg -3' miRNA: 3'- cACUCGCGGUgCGAAGGgU-GGGaCaG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 11306 | 0.67 | 0.743959 |
Target: 5'- -aGGGCGuCCACGCcgCCCAUgaguucuagCUUGUCc -3' miRNA: 3'- caCUCGC-GGUGCGaaGGGUG---------GGACAG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 31496 | 0.68 | 0.685199 |
Target: 5'- uGUGGGCGCguucccaaCGCGCUUCacaCACCCa--- -3' miRNA: 3'- -CACUCGCG--------GUGCGAAGg--GUGGGacag -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 11344 | 0.68 | 0.685199 |
Target: 5'- --uAGCGCCACGaguugCgCUAUCCUGUCg -3' miRNA: 3'- cacUCGCGGUGCgaa--G-GGUGGGACAG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 41953 | 0.68 | 0.683204 |
Target: 5'- ----cCGCCGCGUggucaaaucucgUUCCGCCCUGUCu -3' miRNA: 3'- cacucGCGGUGCGa-----------AGGGUGGGACAG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 142589 | 0.68 | 0.663171 |
Target: 5'- -cGAG-GCCGCGCcgcaaccccugCCCACCC-GUCa -3' miRNA: 3'- caCUCgCGGUGCGaa---------GGGUGGGaCAG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 143405 | 0.68 | 0.645057 |
Target: 5'- aUGAGCGCCucgcgccuuauACGCU--UCAgCCUGUCa -3' miRNA: 3'- cACUCGCGG-----------UGCGAagGGUgGGACAG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 142694 | 0.68 | 0.634976 |
Target: 5'- uUGGGCGCCggcgGCGCgccacgCCUGCCCgcaucGUCg -3' miRNA: 3'- cACUCGCGG----UGCGaa----GGGUGGGa----CAG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 152847 | 0.69 | 0.614816 |
Target: 5'- aGUGuagaGGCGUCACGCggucuaaCCCACUCUGcCg -3' miRNA: 3'- -CAC----UCGCGGUGCGaa-----GGGUGGGACaG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 62304 | 0.69 | 0.584688 |
Target: 5'- -cGAGCGUCGucCGgacuagaCCCGCCCUGUCg -3' miRNA: 3'- caCUCGCGGU--GCgaa----GGGUGGGACAG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 27949 | 0.69 | 0.583688 |
Target: 5'- -cGGGCGCCGCGuCUUCCaaacaacggugcgCGCCCgugGUa -3' miRNA: 3'- caCUCGCGGUGC-GAAGG-------------GUGGGa--CAg -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 89836 | 0.7 | 0.52549 |
Target: 5'- -gGGGCGCCAggaGCUUUCUgcgguguCCCUGUCu -3' miRNA: 3'- caCUCGCGGUg--CGAAGGGu------GGGACAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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