miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24687 3' -57.4 NC_005264.1 + 117253 1.08 0.003017
Target:  5'- aUGCGGAGAACGAGACCGCGGUCUCGUg -3'
miRNA:   3'- -ACGCCUCUUGCUCUGGCGCCAGAGCA- -5'
24687 3' -57.4 NC_005264.1 + 45579 0.83 0.127908
Target:  5'- gGUGGc--ACGAGACCGCGGUCUCGUu -3'
miRNA:   3'- aCGCCucuUGCUCUGGCGCCAGAGCA- -5'
24687 3' -57.4 NC_005264.1 + 92420 0.78 0.29214
Target:  5'- cGCGGGGAaccugaACGAG-CCGCacGGUCUCGUc -3'
miRNA:   3'- aCGCCUCU------UGCUCuGGCG--CCAGAGCA- -5'
24687 3' -57.4 NC_005264.1 + 47937 0.78 0.29214
Target:  5'- gGCGGAGGacgGCGAGACC-CGGUCcagCGUg -3'
miRNA:   3'- aCGCCUCU---UGCUCUGGcGCCAGa--GCA- -5'
24687 3' -57.4 NC_005264.1 + 36480 0.77 0.319739
Target:  5'- gGCGGAGGACGaAGAcgcgggaucucCCGCGG-CUCGUu -3'
miRNA:   3'- aCGCCUCUUGC-UCU-----------GGCGCCaGAGCA- -5'
24687 3' -57.4 NC_005264.1 + 155507 0.77 0.319739
Target:  5'- gGCGGAGGACGaAGAcgcgggaucucCCGCGG-CUCGUu -3'
miRNA:   3'- aCGCCUCUUGC-UCU-----------GGCGCCaGAGCA- -5'
24687 3' -57.4 NC_005264.1 + 136389 0.74 0.476089
Target:  5'- cUGUGGAGcgauGGCGAccgacaacgcccGuCCGCGGUCUCGUa -3'
miRNA:   3'- -ACGCCUC----UUGCU------------CuGGCGCCAGAGCA- -5'
24687 3' -57.4 NC_005264.1 + 99900 0.73 0.494711
Target:  5'- aGCGucGAcGCGAGACCGCGGuUCUCu- -3'
miRNA:   3'- aCGCcuCU-UGCUCUGGCGCC-AGAGca -5'
24687 3' -57.4 NC_005264.1 + 101847 0.73 0.504145
Target:  5'- gGCaGAGAACGAGGCCGCGauaGUCggCGc -3'
miRNA:   3'- aCGcCUCUUGCUCUGGCGC---CAGa-GCa -5'
24687 3' -57.4 NC_005264.1 + 70390 0.72 0.569112
Target:  5'- gGUGGAGcuggagggcggccuGACGAGACCguGCGG-CUCGUu -3'
miRNA:   3'- aCGCCUC--------------UUGCUCUGG--CGCCaGAGCA- -5'
24687 3' -57.4 NC_005264.1 + 149444 0.72 0.581991
Target:  5'- gUGCGGAGAGCuGcGGCgGaggaGGUCUCGg -3'
miRNA:   3'- -ACGCCUCUUG-CuCUGgCg---CCAGAGCa -5'
24687 3' -57.4 NC_005264.1 + 30417 0.72 0.581991
Target:  5'- gUGCGGAGAGCuGcGGCgGaggaGGUCUCGg -3'
miRNA:   3'- -ACGCCUCUUG-CuCUGgCg---CCAGAGCa -5'
24687 3' -57.4 NC_005264.1 + 114676 0.71 0.598918
Target:  5'- aGCGGGGGugcagccacgccgaGCaGGAUugCGCGGUCUCGUg -3'
miRNA:   3'- aCGCCUCU--------------UGcUCUG--GCGCCAGAGCA- -5'
24687 3' -57.4 NC_005264.1 + 64938 0.71 0.601913
Target:  5'- aGCGaGAGccuucGCGAGGCCGCGGaauUCUCu- -3'
miRNA:   3'- aCGC-CUCu----UGCUCUGGCGCC---AGAGca -5'
24687 3' -57.4 NC_005264.1 + 51865 0.71 0.61191
Target:  5'- --gGGAGAcggucuccucggGCGAGACgGCGGUCUgCGg -3'
miRNA:   3'- acgCCUCU------------UGCUCUGgCGCCAGA-GCa -5'
24687 3' -57.4 NC_005264.1 + 30907 0.71 0.621921
Target:  5'- gGgGGAGGacuGCGAGGCCggGCGG-CUCGa -3'
miRNA:   3'- aCgCCUCU---UGCUCUGG--CGCCaGAGCa -5'
24687 3' -57.4 NC_005264.1 + 149933 0.71 0.621921
Target:  5'- gGgGGAGGacuGCGAGGCCggGCGG-CUCGa -3'
miRNA:   3'- aCgCCUCU---UGCUCUGG--CGCCaGAGCa -5'
24687 3' -57.4 NC_005264.1 + 29636 0.71 0.63194
Target:  5'- cGCGGAcGAACGAGGCCcgcaguCGGUC-CGc -3'
miRNA:   3'- aCGCCU-CUUGCUCUGGc-----GCCAGaGCa -5'
24687 3' -57.4 NC_005264.1 + 75300 0.7 0.661966
Target:  5'- aUGCGGAcGACuccucgGAGGCCGCGGgcggCUCa- -3'
miRNA:   3'- -ACGCCUcUUG------CUCUGGCGCCa---GAGca -5'
24687 3' -57.4 NC_005264.1 + 17683 0.7 0.661966
Target:  5'- gGCGcAGc-CGAGGCCGCGGcggCUCGUg -3'
miRNA:   3'- aCGCcUCuuGCUCUGGCGCCa--GAGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.