miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24687 3' -57.4 NC_005264.1 + 2899 0.67 0.845883
Target:  5'- gGCGGGGAgggcgacgGCGAGAgCGaCGGagUCGc -3'
miRNA:   3'- aCGCCUCU--------UGCUCUgGC-GCCagAGCa -5'
24687 3' -57.4 NC_005264.1 + 4525 0.67 0.835523
Target:  5'- cGCGGAGGGgGAGGgguggucuucggcgUCGCGccaaGUCUCGg -3'
miRNA:   3'- aCGCCUCUUgCUCU--------------GGCGC----CAGAGCa -5'
24687 3' -57.4 NC_005264.1 + 6131 0.68 0.786779
Target:  5'- gUGCgGGAGGGCGAgGGCCGCGcGcC-CGUc -3'
miRNA:   3'- -ACG-CCUCUUGCU-CUGGCGC-CaGaGCA- -5'
24687 3' -57.4 NC_005264.1 + 6472 0.66 0.882682
Target:  5'- cGCGGcGAACGucggGGugCGCGGcCaUCGa -3'
miRNA:   3'- aCGCCuCUUGC----UCugGCGCCaG-AGCa -5'
24687 3' -57.4 NC_005264.1 + 11375 0.69 0.749902
Target:  5'- uUGCGGaAGAACGcGGCCGC-GUCgCGg -3'
miRNA:   3'- -ACGCC-UCUUGCuCUGGCGcCAGaGCa -5'
24687 3' -57.4 NC_005264.1 + 13587 0.66 0.895303
Target:  5'- gGCGGAacGAagACGGGACCggcgaucGCGGUCgggacgCGg -3'
miRNA:   3'- aCGCCU--CU--UGCUCUGG-------CGCCAGa-----GCa -5'
24687 3' -57.4 NC_005264.1 + 17683 0.7 0.661966
Target:  5'- gGCGcAGc-CGAGGCCGCGGcggCUCGUg -3'
miRNA:   3'- aCGCcUCuuGCUCUGGCGCCa--GAGCA- -5'
24687 3' -57.4 NC_005264.1 + 20111 0.67 0.837941
Target:  5'- gGUGGGGAagauACGAGggaaaaaucuggGCCGCGG-CUCa- -3'
miRNA:   3'- aCGCCUCU----UGCUC------------UGGCGCCaGAGca -5'
24687 3' -57.4 NC_005264.1 + 21293 0.68 0.759292
Target:  5'- aGCGGGGGACGcGGACCaugGCGGaCUUa- -3'
miRNA:   3'- aCGCCUCUUGC-UCUGG---CGCCaGAGca -5'
24687 3' -57.4 NC_005264.1 + 27909 0.69 0.749902
Target:  5'- gGCGaGGGugagcGACGAcGACCGCGGUgUUGg -3'
miRNA:   3'- aCGC-CUC-----UUGCU-CUGGCGCCAgAGCa -5'
24687 3' -57.4 NC_005264.1 + 29488 0.68 0.777739
Target:  5'- cGUcGAGGA--GGGCCGCGGUCUCu- -3'
miRNA:   3'- aCGcCUCUUgcUCUGGCGCCAGAGca -5'
24687 3' -57.4 NC_005264.1 + 29636 0.71 0.63194
Target:  5'- cGCGGAcGAACGAGGCCcgcaguCGGUC-CGc -3'
miRNA:   3'- aCGCCU-CUUGCUCUGGc-----GCCAGaGCa -5'
24687 3' -57.4 NC_005264.1 + 30417 0.72 0.581991
Target:  5'- gUGCGGAGAGCuGcGGCgGaggaGGUCUCGg -3'
miRNA:   3'- -ACGCCUCUUG-CuCUGgCg---CCAGAGCa -5'
24687 3' -57.4 NC_005264.1 + 30907 0.71 0.621921
Target:  5'- gGgGGAGGacuGCGAGGCCggGCGG-CUCGa -3'
miRNA:   3'- aCgCCUCU---UGCUCUGG--CGCCaGAGCa -5'
24687 3' -57.4 NC_005264.1 + 36073 0.66 0.887423
Target:  5'- cGCGGAGAgcccguuuccgaggACGGGAUgGCGGaCagGUg -3'
miRNA:   3'- aCGCCUCU--------------UGCUCUGgCGCCaGagCA- -5'
24687 3' -57.4 NC_005264.1 + 36480 0.77 0.319739
Target:  5'- gGCGGAGGACGaAGAcgcgggaucucCCGCGG-CUCGUu -3'
miRNA:   3'- aCGCCUCUUGC-UCU-----------GGCGCCaGAGCA- -5'
24687 3' -57.4 NC_005264.1 + 36660 0.66 0.868567
Target:  5'- cGCGGAuGGACcuGGCCGCGaccacGUUUCGUc -3'
miRNA:   3'- aCGCCU-CUUGcuCUGGCGC-----CAGAGCA- -5'
24687 3' -57.4 NC_005264.1 + 37114 0.69 0.749902
Target:  5'- gGCaggacGAGGGCGAGGCgGCcGUCUCGg -3'
miRNA:   3'- aCGc----CUCUUGCUCUGgCGcCAGAGCa -5'
24687 3' -57.4 NC_005264.1 + 41898 0.69 0.721173
Target:  5'- uUGcCGGAGGAUGGGAuCCGCaGUCgCGg -3'
miRNA:   3'- -AC-GCCUCUUGCUCU-GGCGcCAGaGCa -5'
24687 3' -57.4 NC_005264.1 + 45161 0.66 0.882682
Target:  5'- cGCGGAGGcAgGAGAgCGCGGcagCGa -3'
miRNA:   3'- aCGCCUCU-UgCUCUgGCGCCagaGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.