miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24687 3' -57.4 NC_005264.1 + 117253 1.08 0.003017
Target:  5'- aUGCGGAGAACGAGACCGCGGUCUCGUg -3'
miRNA:   3'- -ACGCCUCUUGCUCUGGCGCCAGAGCA- -5'
24687 3' -57.4 NC_005264.1 + 125158 0.68 0.786779
Target:  5'- gUGCgGGAGGGCGAgGGCCGCGcGcC-CGUc -3'
miRNA:   3'- -ACG-CCUCUUGCU-CUGGCGC-CaGaGCA- -5'
24687 3' -57.4 NC_005264.1 + 160924 0.67 0.82982
Target:  5'- uUGcCGGAGGAUGGGAucCCGCaGUCgCGg -3'
miRNA:   3'- -AC-GCCUCUUGCUCU--GGCGcCAGaGCa -5'
24687 3' -57.4 NC_005264.1 + 132614 0.66 0.895303
Target:  5'- gGCGGAacGAagACGGGACCggcgaucGCGGUCgggacgCGg -3'
miRNA:   3'- aCGCCU--CU--UGCUCUGG-------CGCCAGa-----GCa -5'
24687 3' -57.4 NC_005264.1 + 70390 0.72 0.569112
Target:  5'- gGUGGAGcuggagggcggccuGACGAGACCguGCGG-CUCGUu -3'
miRNA:   3'- aCGCCUC--------------UUGCUCUGG--CGCCaGAGCA- -5'
24687 3' -57.4 NC_005264.1 + 149444 0.72 0.581991
Target:  5'- gUGCGGAGAGCuGcGGCgGaggaGGUCUCGg -3'
miRNA:   3'- -ACGCCUCUUG-CuCUGgCg---CCAGAGCa -5'
24687 3' -57.4 NC_005264.1 + 149933 0.71 0.621921
Target:  5'- gGgGGAGGacuGCGAGGCCggGCGG-CUCGa -3'
miRNA:   3'- aCgCCUCU---UGCUCUGG--CGCCaGAGCa -5'
24687 3' -57.4 NC_005264.1 + 17683 0.7 0.661966
Target:  5'- gGCGcAGc-CGAGGCCGCGGcggCUCGUg -3'
miRNA:   3'- aCGCcUCuuGCUCUGGCGCCa--GAGCA- -5'
24687 3' -57.4 NC_005264.1 + 76242 0.69 0.721173
Target:  5'- cGCGaGGcGCGAcGACCGCGuGUCUCa- -3'
miRNA:   3'- aCGCcUCuUGCU-CUGGCGC-CAGAGca -5'
24687 3' -57.4 NC_005264.1 + 29488 0.68 0.777739
Target:  5'- cGUcGAGGA--GGGCCGCGGUCUCu- -3'
miRNA:   3'- aCGcCUCUUgcUCUGGCGCCAGAGca -5'
24687 3' -57.4 NC_005264.1 + 27909 0.69 0.749902
Target:  5'- gGCGaGGGugagcGACGAcGACCGCGGUgUUGg -3'
miRNA:   3'- aCGC-CUC-----UUGCU-CUGGCGCCAgAGCa -5'
24687 3' -57.4 NC_005264.1 + 85311 0.7 0.661966
Target:  5'- cGCGGAGGACGGGAUagUGCaGUUcgUCGUc -3'
miRNA:   3'- aCGCCUCUUGCUCUG--GCGcCAG--AGCA- -5'
24687 3' -57.4 NC_005264.1 + 155507 0.77 0.319739
Target:  5'- gGCGGAGGACGaAGAcgcgggaucucCCGCGG-CUCGUu -3'
miRNA:   3'- aCGCCUCUUGC-UCU-----------GGCGCCaGAGCA- -5'
24687 3' -57.4 NC_005264.1 + 156141 0.69 0.749902
Target:  5'- gGCaggacGAGGGCGAGGCgGCcGUCUCGg -3'
miRNA:   3'- aCGc----CUCUUGCUCUGgCGcCAGAGCa -5'
24687 3' -57.4 NC_005264.1 + 136389 0.74 0.476089
Target:  5'- cUGUGGAGcgauGGCGAccgacaacgcccGuCCGCGGUCUCGUa -3'
miRNA:   3'- -ACGCCUC----UUGCU------------CuGGCGCCAGAGCA- -5'
24687 3' -57.4 NC_005264.1 + 75300 0.7 0.661966
Target:  5'- aUGCGGAcGACuccucgGAGGCCGCGGgcggCUCa- -3'
miRNA:   3'- -ACGCCUcUUG------CUCUGGCGCCa---GAGca -5'
24687 3' -57.4 NC_005264.1 + 59516 0.68 0.768574
Target:  5'- uUGgGGGGcuCGAGACacgagacuccuaCGCGGUCUCu- -3'
miRNA:   3'- -ACgCCUCuuGCUCUG------------GCGCCAGAGca -5'
24687 3' -57.4 NC_005264.1 + 93070 0.67 0.821526
Target:  5'- cUGCGGGa---GGGGCCGCGGcgacCUCGg -3'
miRNA:   3'- -ACGCCUcuugCUCUGGCGCCa---GAGCa -5'
24687 3' -57.4 NC_005264.1 + 99900 0.73 0.494711
Target:  5'- aGCGucGAcGCGAGACCGCGGuUCUCu- -3'
miRNA:   3'- aCGCcuCU-UGCUCUGGCGCC-AGAGca -5'
24687 3' -57.4 NC_005264.1 + 51865 0.71 0.61191
Target:  5'- --gGGAGAcggucuccucggGCGAGACgGCGGUCUgCGg -3'
miRNA:   3'- acgCCUCU------------UGCUCUGgCGCCAGA-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.