miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24687 5' -58.5 NC_005264.1 + 117289 1.08 0.002279
Target:  5'- cGUACGCGUGCGCGAUGCCGCUCUCCGc -3'
miRNA:   3'- -CAUGCGCACGCGCUACGGCGAGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 148341 0.75 0.337386
Target:  5'- --uUGCGUGCGCGGUcGCC-CUCUCUGc -3'
miRNA:   3'- cauGCGCACGCGCUA-CGGcGAGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 58893 0.72 0.47978
Target:  5'- -cACGCGUucGCGCauagcgGAUGCCGC-CUCCu -3'
miRNA:   3'- caUGCGCA--CGCG------CUACGGCGaGAGGc -5'
24687 5' -58.5 NC_005264.1 + 79336 0.72 0.498442
Target:  5'- cGUGCguaGCGUGCGC---GCUGCUCUCUGu -3'
miRNA:   3'- -CAUG---CGCACGCGcuaCGGCGAGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 114898 0.71 0.536684
Target:  5'- -cACGCucGUGC-CGA-GCCGUUCUCCGu -3'
miRNA:   3'- caUGCG--CACGcGCUaCGGCGAGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 81404 0.71 0.555209
Target:  5'- aUGCGgGUGCGCGccgcuugGUGCuCGCUCUUUa -3'
miRNA:   3'- cAUGCgCACGCGC-------UACG-GCGAGAGGc -5'
24687 5' -58.5 NC_005264.1 + 79303 0.71 0.556189
Target:  5'- --cCGCGUGCGgGGucaUGUCGCUCgCCGc -3'
miRNA:   3'- cauGCGCACGCgCU---ACGGCGAGaGGC- -5'
24687 5' -58.5 NC_005264.1 + 120814 0.7 0.595751
Target:  5'- --cCGCGUGCGCGucgacacUGCCGC-CguggCCGa -3'
miRNA:   3'- cauGCGCACGCGCu------ACGGCGaGa---GGC- -5'
24687 5' -58.5 NC_005264.1 + 79432 0.7 0.625712
Target:  5'- ---aGCGUGgGCGGUGCggGgUCUCCGg -3'
miRNA:   3'- caugCGCACgCGCUACGg-CgAGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 12705 0.69 0.665687
Target:  5'- uUugGCGUGCGCGG-GCC-CUCugacaugcUCCGc -3'
miRNA:   3'- cAugCGCACGCGCUaCGGcGAG--------AGGC- -5'
24687 5' -58.5 NC_005264.1 + 146418 0.69 0.675636
Target:  5'- -gGCGgGUGCugauggcuCGAUGCCGCggCUCUGa -3'
miRNA:   3'- caUGCgCACGc-------GCUACGGCGa-GAGGC- -5'
24687 5' -58.5 NC_005264.1 + 20830 0.69 0.685551
Target:  5'- -cGCGCGgacgGCGaGAUGCCGUaUUCCa -3'
miRNA:   3'- caUGCGCa---CGCgCUACGGCGaGAGGc -5'
24687 5' -58.5 NC_005264.1 + 4769 0.68 0.694438
Target:  5'- uGUGCGCcuucUGCGCGgcGCCGUUCgcgcaccUCCa -3'
miRNA:   3'- -CAUGCGc---ACGCGCuaCGGCGAG-------AGGc -5'
24687 5' -58.5 NC_005264.1 + 69670 0.68 0.705245
Target:  5'- -cACGCG-GCGCuGggGCCuugGUUCUCCGc -3'
miRNA:   3'- caUGCGCaCGCG-CuaCGG---CGAGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 83729 0.68 0.705245
Target:  5'- gGUACGCG-GCGgcagaGAUGCC-CUCUgCGg -3'
miRNA:   3'- -CAUGCGCaCGCg----CUACGGcGAGAgGC- -5'
24687 5' -58.5 NC_005264.1 + 130267 0.68 0.715008
Target:  5'- -cGCGgGUGCGCGAcguUGCgGCggCUaCCGc -3'
miRNA:   3'- caUGCgCACGCGCU---ACGgCGa-GA-GGC- -5'
24687 5' -58.5 NC_005264.1 + 129580 0.68 0.724703
Target:  5'- -gGCGCGgaucGCGCGuucGCCGCUgcUUCCu -3'
miRNA:   3'- caUGCGCa---CGCGCua-CGGCGA--GAGGc -5'
24687 5' -58.5 NC_005264.1 + 10553 0.68 0.724703
Target:  5'- -gGCGCGgaucGCGCGuucGCCGCUgcUUCCu -3'
miRNA:   3'- caUGCGCa---CGCGCua-CGGCGA--GAGGc -5'
24687 5' -58.5 NC_005264.1 + 31663 0.68 0.724703
Target:  5'- -gACGCGaacUGCGCGAgGCaggGCUCUCgGc -3'
miRNA:   3'- caUGCGC---ACGCGCUaCGg--CGAGAGgC- -5'
24687 5' -58.5 NC_005264.1 + 117513 0.68 0.734322
Target:  5'- -gGCGCG-GCGCGucugcgGUCGCUCcCCu -3'
miRNA:   3'- caUGCGCaCGCGCua----CGGCGAGaGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.