Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24687 | 5' | -58.5 | NC_005264.1 | + | 3695 | 0.66 | 0.840712 |
Target: 5'- -gGCGCGgaaaggGCGCacaguacuUGCCGCgggcgggcuUCUCCGa -3' miRNA: 3'- caUGCGCa-----CGCGcu------ACGGCG---------AGAGGC- -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 4498 | 0.66 | 0.816051 |
Target: 5'- -gGCGCG-GUGCG--GCCGCUUguguUCCGc -3' miRNA: 3'- caUGCGCaCGCGCuaCGGCGAG----AGGC- -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 4769 | 0.68 | 0.694438 |
Target: 5'- uGUGCGCcuucUGCGCGgcGCCGUUCgcgcaccUCCa -3' miRNA: 3'- -CAUGCGc---ACGCGCuaCGGCGAG-------AGGc -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 5417 | 0.67 | 0.789955 |
Target: 5'- cGUACGCG-GCaucugucucgGCGucGCCGCUCUcgCCGg -3' miRNA: 3'- -CAUGCGCaCG----------CGCuaCGGCGAGA--GGC- -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 6231 | 0.67 | 0.780973 |
Target: 5'- --cCGCGgccGcCGCGAgacuUGCCGC-CUCCGu -3' miRNA: 3'- cauGCGCa--C-GCGCU----ACGGCGaGAGGC- -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 10553 | 0.68 | 0.724703 |
Target: 5'- -gGCGCGgaucGCGCGuucGCCGCUgcUUCCu -3' miRNA: 3'- caUGCGCa---CGCGCua-CGGCGA--GAGGc -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 12705 | 0.69 | 0.665687 |
Target: 5'- uUugGCGUGCGCGG-GCC-CUCugacaugcUCCGc -3' miRNA: 3'- cAugCGCACGCGCUaCGGcGAG--------AGGC- -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 13022 | 0.67 | 0.789955 |
Target: 5'- aUACGUGUcGCGgGAcccuacgGCCGCUCgUCUGc -3' miRNA: 3'- cAUGCGCA-CGCgCUa------CGGCGAG-AGGC- -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 20830 | 0.69 | 0.685551 |
Target: 5'- -cGCGCGgacgGCGaGAUGCCGUaUUCCa -3' miRNA: 3'- caUGCGCa---CGCgCUACGGCGaGAGGc -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 25836 | 0.66 | 0.824441 |
Target: 5'- uGUACGCGUuuugcauaacGCGCcaaaacGCCGC-CUCCa -3' miRNA: 3'- -CAUGCGCA----------CGCGcua---CGGCGaGAGGc -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 26360 | 0.66 | 0.816051 |
Target: 5'- uGUGCGCcgcggcaggcUGCGCGgcGCCG-UCUCUGa -3' miRNA: 3'- -CAUGCGc---------ACGCGCuaCGGCgAGAGGC- -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 31663 | 0.68 | 0.724703 |
Target: 5'- -gACGCGaacUGCGCGAgGCaggGCUCUCgGc -3' miRNA: 3'- caUGCGC---ACGCGCUaCGg--CGAGAGgC- -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 34259 | 0.66 | 0.807502 |
Target: 5'- cGUGCGCGcgguaaucCGCG-UGCUGCgCUCCGc -3' miRNA: 3'- -CAUGCGCac------GCGCuACGGCGaGAGGC- -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 36975 | 0.67 | 0.789062 |
Target: 5'- uUGCGCGcugGCGCcAUagucgccGCCGC-CUCCGg -3' miRNA: 3'- cAUGCGCa--CGCGcUA-------CGGCGaGAGGC- -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 37671 | 0.68 | 0.743856 |
Target: 5'- aUGCGCGacggGCGCGcgGCCcucGCcCUCCc -3' miRNA: 3'- cAUGCGCa---CGCGCuaCGG---CGaGAGGc -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 41672 | 0.66 | 0.824441 |
Target: 5'- cGUGCGCaucaGUGCGgaccguacguauUGAUGCUGCUCguagCCc -3' miRNA: 3'- -CAUGCG----CACGC------------GCUACGGCGAGa---GGc -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 56139 | 0.66 | 0.816051 |
Target: 5'- -cGCGCGagUGuCGCGuugGCCGCUuuuucgcaCUCCGc -3' miRNA: 3'- caUGCGC--AC-GCGCua-CGGCGA--------GAGGC- -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 58893 | 0.72 | 0.47978 |
Target: 5'- -cACGCGUucGCGCauagcgGAUGCCGC-CUCCu -3' miRNA: 3'- caUGCGCA--CGCG------CUACGGCGaGAGGc -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 60858 | 0.66 | 0.840712 |
Target: 5'- -gGCGCGUGCGCG--GCaaaGUUUUCUa -3' miRNA: 3'- caUGCGCACGCGCuaCGg--CGAGAGGc -5' |
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24687 | 5' | -58.5 | NC_005264.1 | + | 65813 | 0.66 | 0.807502 |
Target: 5'- uUGCGCG-GCGauuuuUGCCGCcUCUUCGu -3' miRNA: 3'- cAUGCGCaCGCgcu--ACGGCG-AGAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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