miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24687 5' -58.5 NC_005264.1 + 117289 1.08 0.002279
Target:  5'- cGUACGCGUGCGCGAUGCCGCUCUCCGc -3'
miRNA:   3'- -CAUGCGCACGCGCUACGGCGAGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 34259 0.66 0.807502
Target:  5'- cGUGCGCGcgguaaucCGCG-UGCUGCgCUCCGc -3'
miRNA:   3'- -CAUGCGCac------GCGCuACGGCGaGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 41672 0.66 0.824441
Target:  5'- cGUGCGCaucaGUGCGgaccguacguauUGAUGCUGCUCguagCCc -3'
miRNA:   3'- -CAUGCG----CACGC------------GCUACGGCGAGa---GGc -5'
24687 5' -58.5 NC_005264.1 + 108604 0.66 0.840712
Target:  5'- cGUugGC--GCGCGggGCCGC-CUCg- -3'
miRNA:   3'- -CAugCGcaCGCGCuaCGGCGaGAGgc -5'
24687 5' -58.5 NC_005264.1 + 12705 0.69 0.665687
Target:  5'- uUugGCGUGCGCGG-GCC-CUCugacaugcUCCGc -3'
miRNA:   3'- cAugCGCACGCGCUaCGGcGAG--------AGGC- -5'
24687 5' -58.5 NC_005264.1 + 146418 0.69 0.675636
Target:  5'- -gGCGgGUGCugauggcuCGAUGCCGCggCUCUGa -3'
miRNA:   3'- caUGCgCACGc-------GCUACGGCGa-GAGGC- -5'
24687 5' -58.5 NC_005264.1 + 83729 0.68 0.705245
Target:  5'- gGUACGCG-GCGgcagaGAUGCC-CUCUgCGg -3'
miRNA:   3'- -CAUGCGCaCGCg----CUACGGcGAGAgGC- -5'
24687 5' -58.5 NC_005264.1 + 129580 0.68 0.724703
Target:  5'- -gGCGCGgaucGCGCGuucGCCGCUgcUUCCu -3'
miRNA:   3'- caUGCGCa---CGCGCua-CGGCGA--GAGGc -5'
24687 5' -58.5 NC_005264.1 + 156697 0.68 0.743856
Target:  5'- aUGCGCGacggGCGCGcgGCCcucGCcCUCCc -3'
miRNA:   3'- cAUGCGCa---CGCGCuaCGG---CGaGAGGc -5'
24687 5' -58.5 NC_005264.1 + 124444 0.67 0.789955
Target:  5'- cGUACGCG-GCaucugucucgGCGucGCCGCUCUcgCCGg -3'
miRNA:   3'- -CAUGCGCaCG----------CGCuaCGGCGAGA--GGC- -5'
24687 5' -58.5 NC_005264.1 + 156002 0.67 0.789062
Target:  5'- uUGCGCGcugGCGCcAUagucgccGCCGC-CUCCGg -3'
miRNA:   3'- cAUGCGCa--CGCGcUA-------CGGCGaGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 104568 0.68 0.743856
Target:  5'- gGUGCGCGcaaGCGCcAUGCCGCccacgggaUCgggCCGa -3'
miRNA:   3'- -CAUGCGCa--CGCGcUACGGCG--------AGa--GGC- -5'
24687 5' -58.5 NC_005264.1 + 148341 0.75 0.337386
Target:  5'- --uUGCGUGCGCGGUcGCC-CUCUCUGc -3'
miRNA:   3'- cauGCGCACGCGCUA-CGGcGAGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 79127 0.67 0.789955
Target:  5'- -gGCgGCGUGCGCu-UGCCcCuUCUCCGu -3'
miRNA:   3'- caUG-CGCACGCGcuACGGcG-AGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 79336 0.72 0.498442
Target:  5'- cGUGCguaGCGUGCGC---GCUGCUCUCUGu -3'
miRNA:   3'- -CAUG---CGCACGCGcuaCGGCGAGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 117513 0.68 0.734322
Target:  5'- -gGCGCG-GCGCGucugcgGUCGCUCcCCu -3'
miRNA:   3'- caUGCGCaCGCGCua----CGGCGAGaGGc -5'
24687 5' -58.5 NC_005264.1 + 13022 0.67 0.789955
Target:  5'- aUACGUGUcGCGgGAcccuacgGCCGCUCgUCUGc -3'
miRNA:   3'- cAUGCGCA-CGCgCUa------CGGCGAG-AGGC- -5'
24687 5' -58.5 NC_005264.1 + 4498 0.66 0.816051
Target:  5'- -gGCGCG-GUGCG--GCCGCUUguguUCCGc -3'
miRNA:   3'- caUGCGCaCGCGCuaCGGCGAG----AGGC- -5'
24687 5' -58.5 NC_005264.1 + 79303 0.71 0.556189
Target:  5'- --cCGCGUGCGgGGucaUGUCGCUCgCCGc -3'
miRNA:   3'- cauGCGCACGCgCU---ACGGCGAGaGGC- -5'
24687 5' -58.5 NC_005264.1 + 4769 0.68 0.694438
Target:  5'- uGUGCGCcuucUGCGCGgcGCCGUUCgcgcaccUCCa -3'
miRNA:   3'- -CAUGCGc---ACGCGCuaCGGCGAG-------AGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.