miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24698 5' -55 NC_005264.1 + 120772 0.65 0.934676
Target:  5'- cGCA-GCUgacgCCACgCGCCgCgGGCAAc- -3'
miRNA:   3'- -CGUaCGAaa--GGUG-GCGG-GgCCGUUuu -5'
24698 5' -55 NC_005264.1 + 91212 0.65 0.934676
Target:  5'- cGCAcuggGCUaucucugCCGCCGCCucgCCGGUGAGGg -3'
miRNA:   3'- -CGUa---CGAaa-----GGUGGCGG---GGCCGUUUU- -5'
24698 5' -55 NC_005264.1 + 57991 0.65 0.934676
Target:  5'- cGCGcgGCgg-CCguggcucaGCgGCCCCGGCGGAc -3'
miRNA:   3'- -CGUa-CGaaaGG--------UGgCGGGGCCGUUUu -5'
24698 5' -55 NC_005264.1 + 7933 0.65 0.934676
Target:  5'- cGCGUccacGCgucgUCCACgGCCgCGGCGu-- -3'
miRNA:   3'- -CGUA----CGaa--AGGUGgCGGgGCCGUuuu -5'
24698 5' -55 NC_005264.1 + 142384 0.65 0.934676
Target:  5'- cCAUGCgcgCCGCUGuCCgCCGGCu--- -3'
miRNA:   3'- cGUACGaaaGGUGGC-GG-GGCCGuuuu -5'
24698 5' -55 NC_005264.1 + 24643 0.65 0.934676
Target:  5'- cGCAUGCUUaauccCCACgGUUCUGGCc--- -3'
miRNA:   3'- -CGUACGAAa----GGUGgCGGGGCCGuuuu -5'
24698 5' -55 NC_005264.1 + 38088 0.66 0.9295
Target:  5'- cCGUGCUUccUUgGCC-CCCCGGgAAGAa -3'
miRNA:   3'- cGUACGAA--AGgUGGcGGGGCCgUUUU- -5'
24698 5' -55 NC_005264.1 + 134393 0.66 0.9295
Target:  5'- cGCAUugaGCagUUCACgGCCCgCGGCAu-- -3'
miRNA:   3'- -CGUA---CGaaAGGUGgCGGG-GCCGUuuu -5'
24698 5' -55 NC_005264.1 + 137963 0.66 0.924077
Target:  5'- ---aGCgaagCCucguGCCGCCCCGGCu--- -3'
miRNA:   3'- cguaCGaaa-GG----UGGCGGGGCCGuuuu -5'
24698 5' -55 NC_005264.1 + 39131 0.66 0.924077
Target:  5'- cGCG-GCg--CCACuCGCCCCGacGCAGGu -3'
miRNA:   3'- -CGUaCGaaaGGUG-GCGGGGC--CGUUUu -5'
24698 5' -55 NC_005264.1 + 158158 0.66 0.924077
Target:  5'- cGCG-GCg--CCACuCGCCCCGacGCAGGu -3'
miRNA:   3'- -CGUaCGaaaGGUG-GCGGGGC--CGUUUu -5'
24698 5' -55 NC_005264.1 + 46160 0.66 0.918405
Target:  5'- cGCGUGUUUgUCCccuggaucggcgGCCGCCCCGcCAu-- -3'
miRNA:   3'- -CGUACGAA-AGG------------UGGCGGGGCcGUuuu -5'
24698 5' -55 NC_005264.1 + 141260 0.66 0.918405
Target:  5'- gGCAcaccCUUUCCACgGUCUCGGCGc-- -3'
miRNA:   3'- -CGUac--GAAAGGUGgCGGGGCCGUuuu -5'
24698 5' -55 NC_005264.1 + 24347 0.66 0.912486
Target:  5'- gGCGggGCauauccCCGCCGCUCUGGCAu-- -3'
miRNA:   3'- -CGUa-CGaaa---GGUGGCGGGGCCGUuuu -5'
24698 5' -55 NC_005264.1 + 87782 0.66 0.912486
Target:  5'- cGCGUcaGCUacUCCGCCGaCCCgGGCu--- -3'
miRNA:   3'- -CGUA--CGAa-AGGUGGC-GGGgCCGuuuu -5'
24698 5' -55 NC_005264.1 + 152534 0.66 0.906321
Target:  5'- -aGUGCgcgUCGCUGCgCCCGGUAGGc -3'
miRNA:   3'- cgUACGaaaGGUGGCG-GGGCCGUUUu -5'
24698 5' -55 NC_005264.1 + 33507 0.66 0.906321
Target:  5'- -aGUGCgcgUCGCUGCgCCCGGUAGGc -3'
miRNA:   3'- cgUACGaaaGGUGGCG-GGGCCGUUUu -5'
24698 5' -55 NC_005264.1 + 54979 0.66 0.906321
Target:  5'- uUAUGUgUUUCUACCGCggCGGCAAGAa -3'
miRNA:   3'- cGUACG-AAAGGUGGCGggGCCGUUUU- -5'
24698 5' -55 NC_005264.1 + 139493 0.67 0.899912
Target:  5'- aGCAcGCUUUCgAUCGCUa-GGCAGGAa -3'
miRNA:   3'- -CGUaCGAAAGgUGGCGGggCCGUUUU- -5'
24698 5' -55 NC_005264.1 + 110373 0.67 0.893262
Target:  5'- aGUAUGCUaa-UACCGCCgaCGGCGGGc -3'
miRNA:   3'- -CGUACGAaagGUGGCGGg-GCCGUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.