miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24707 3' -55.2 NC_005264.1 + 28916 0.66 0.933181
Target:  5'- cACGCCCCCAauauuauccuccuccCACCCCcAAaaaAAAACc- -3'
miRNA:   3'- -UGCGGGGGU---------------GUGGGGcUUg--UUUUGuu -5'
24707 3' -55.2 NC_005264.1 + 148790 0.66 0.931123
Target:  5'- cACGUUCCCACccgGCCCCGccACGuccGGACGAc -3'
miRNA:   3'- -UGCGGGGGUG---UGGGGCu-UGU---UUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 67502 0.66 0.931123
Target:  5'- uCGgCCCCAUugCCuCGGaucacGCGAGACAc -3'
miRNA:   3'- uGCgGGGGUGugGG-GCU-----UGUUUUGUu -5'
24707 3' -55.2 NC_005264.1 + 40357 0.66 0.930603
Target:  5'- uCGCCCCCGagACCCucguggcgcuuugCGAGCAGcGCGGg -3'
miRNA:   3'- uGCGGGGGUg-UGGG-------------GCUUGUUuUGUU- -5'
24707 3' -55.2 NC_005264.1 + 159384 0.66 0.930603
Target:  5'- uCGCCCCCGagACCCucguggcgcuuugCGAGCAGcGCGGg -3'
miRNA:   3'- uGCGGGGGUg-UGGG-------------GCUUGUUuUGUU- -5'
24707 3' -55.2 NC_005264.1 + 154504 0.66 0.925807
Target:  5'- uCGCCCCCucaaACCCUaggGGACGAcGGCGAc -3'
miRNA:   3'- uGCGGGGGug--UGGGG---CUUGUU-UUGUU- -5'
24707 3' -55.2 NC_005264.1 + 123187 0.66 0.925807
Target:  5'- uUGCCgCCCACGCCgCGGugugGgGAAGCGGa -3'
miRNA:   3'- uGCGG-GGGUGUGGgGCU----UgUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 4160 0.66 0.925807
Target:  5'- uUGCCgCCCACGCCgCGGugugGgGAAGCGGa -3'
miRNA:   3'- uGCGG-GGGUGUGGgGCU----UgUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 35477 0.66 0.925807
Target:  5'- uCGCCCCCucaaACCCUaggGGACGAcGGCGAc -3'
miRNA:   3'- uGCGGGGGug--UGGGG---CUUGUU-UUGUU- -5'
24707 3' -55.2 NC_005264.1 + 48550 0.66 0.925807
Target:  5'- cGCGCCCCCGuCGCCUucguCGuccGCAcAACAu -3'
miRNA:   3'- -UGCGGGGGU-GUGGG----GCu--UGUuUUGUu -5'
24707 3' -55.2 NC_005264.1 + 42350 0.66 0.925807
Target:  5'- uCGCCCCCGCcaccuACUCCGcGCAccgauGCGAu -3'
miRNA:   3'- uGCGGGGGUG-----UGGGGCuUGUuu---UGUU- -5'
24707 3' -55.2 NC_005264.1 + 144775 0.66 0.920247
Target:  5'- aAUGCCCgCGCGCCCUGGcucGCGGcGCc- -3'
miRNA:   3'- -UGCGGGgGUGUGGGGCU---UGUUuUGuu -5'
24707 3' -55.2 NC_005264.1 + 28755 0.66 0.914441
Target:  5'- uACGUCUCC-CAgCCUGAcaGCAGGACAu -3'
miRNA:   3'- -UGCGGGGGuGUgGGGCU--UGUUUUGUu -5'
24707 3' -55.2 NC_005264.1 + 90831 0.66 0.914441
Target:  5'- gGCGgCCgCGCACgUCGAGCAagAAACAGc -3'
miRNA:   3'- -UGCgGGgGUGUGgGGCUUGU--UUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 134442 0.66 0.914441
Target:  5'- cACGCauaCCCACGCCCaGGAUcggcauggGGGACAAu -3'
miRNA:   3'- -UGCGg--GGGUGUGGGgCUUG--------UUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 161709 0.66 0.914441
Target:  5'- cGCGaCCCCCGCAUgcacaacgaCCCGcgccAUAAAGCAGu -3'
miRNA:   3'- -UGC-GGGGGUGUG---------GGGCu---UGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 64743 0.66 0.913847
Target:  5'- gUGCCCCgCGCaaggaucGCCCUGAuagauuuggccGCGAAACGAu -3'
miRNA:   3'- uGCGGGG-GUG-------UGGGGCU-----------UGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 40056 0.67 0.902101
Target:  5'- -gGCCCgCAgCGCCCCGGcgGCAAGAgGc -3'
miRNA:   3'- ugCGGGgGU-GUGGGGCU--UGUUUUgUu -5'
24707 3' -55.2 NC_005264.1 + 159083 0.67 0.902101
Target:  5'- -gGCCCgCAgCGCCCCGGcgGCAAGAgGc -3'
miRNA:   3'- ugCGGGgGU-GUGGGGCU--UGUUUUgUu -5'
24707 3' -55.2 NC_005264.1 + 149562 0.67 0.895571
Target:  5'- gACuCUCCCGCggacaGCCCCGGGCGGAGgGGg -3'
miRNA:   3'- -UGcGGGGGUG-----UGGGGCUUGUUUUgUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.