miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24709 5' -48 NC_005264.1 + 10195 1.08 0.017788
Target:  5'- aGAGAAACAACACCAAACGAGCAGGUAg -3'
miRNA:   3'- -CUCUUUGUUGUGGUUUGCUCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 129222 1.08 0.017788
Target:  5'- aGAGAAACAACACCAAACGAGCAGGUAg -3'
miRNA:   3'- -CUCUUUGUUGUGGUUUGCUCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 104325 0.76 0.836557
Target:  5'- uGAGgcGCGACGCCGcuuACGAGgAGGUGc -3'
miRNA:   3'- -CUCuuUGUUGUGGUu--UGCUCgUCCAU- -5'
24709 5' -48 NC_005264.1 + 106304 0.75 0.862
Target:  5'- gGAGAgcGACAGCugC-GGCGGGCAGGg- -3'
miRNA:   3'- -CUCU--UUGUUGugGuUUGCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 52858 0.72 0.945873
Target:  5'- ---cGGCAAC-CCGAGCGGGCAGGc- -3'
miRNA:   3'- cucuUUGUUGuGGUUUGCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 63804 0.72 0.945873
Target:  5'- gGGGAGGCcccgcuuuGCGCUAGAuCGAGUAGGUAg -3'
miRNA:   3'- -CUCUUUGu-------UGUGGUUU-GCUCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 51515 0.72 0.950439
Target:  5'- cAGGGugGACugCu--CGAGCAGGUGc -3'
miRNA:   3'- cUCUUugUUGugGuuuGCUCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 29134 0.72 0.952191
Target:  5'- cAGAGGCAGCACCAgugcgcGgcggcaaggaccgcgGCGAGCAGGc- -3'
miRNA:   3'- cUCUUUGUUGUGGU------U---------------UGCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 76443 0.72 0.95474
Target:  5'- uGAGAAACAACACCGucCGccGGCAGa-- -3'
miRNA:   3'- -CUCUUUGUUGUGGUuuGC--UCGUCcau -5'
24709 5' -48 NC_005264.1 + 111100 0.72 0.962568
Target:  5'- aGAGAugGGCuACACCcucgAGAUGGGCGGGUGc -3'
miRNA:   3'- -CUCU--UUGuUGUGG----UUUGCUCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 74825 0.71 0.972461
Target:  5'- cGAGGAACGuggGCACCAG--GGGCAGGc- -3'
miRNA:   3'- -CUCUUUGU---UGUGGUUugCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 68733 0.71 0.975293
Target:  5'- ---cAGCGGCGCCAGAaccuCGGGCGGGUu -3'
miRNA:   3'- cucuUUGUUGUGGUUU----GCUCGUCCAu -5'
24709 5' -48 NC_005264.1 + 21532 0.7 0.980311
Target:  5'- -uGGGACAGCACCGGGCGAccGUuuauGGUGu -3'
miRNA:   3'- cuCUUUGUUGUGGUUUGCU--CGu---CCAU- -5'
24709 5' -48 NC_005264.1 + 115905 0.7 0.980311
Target:  5'- --uGAGCAACGCCAaggaGACGAGCGGcGa- -3'
miRNA:   3'- cucUUUGUUGUGGU----UUGCUCGUC-Cau -5'
24709 5' -48 NC_005264.1 + 154522 0.7 0.980311
Target:  5'- gGGGAcgacGGCGACGCC--GCGGcGCAGGUGc -3'
miRNA:   3'- -CUCU----UUGUUGUGGuuUGCU-CGUCCAU- -5'
24709 5' -48 NC_005264.1 + 35495 0.7 0.980311
Target:  5'- gGGGAcgacGGCGACGCC--GCGGcGCAGGUGc -3'
miRNA:   3'- -CUCU----UUGUUGUGGuuUGCU-CGUCCAU- -5'
24709 5' -48 NC_005264.1 + 149798 0.7 0.982515
Target:  5'- --cAAACGACAgCAGACGAGCGGccGUAg -3'
miRNA:   3'- cucUUUGUUGUgGUUUGCUCGUC--CAU- -5'
24709 5' -48 NC_005264.1 + 48066 0.7 0.984527
Target:  5'- cAGGGACAucgGCCGAGCGGcGCAGGg- -3'
miRNA:   3'- cUCUUUGUug-UGGUUUGCU-CGUCCau -5'
24709 5' -48 NC_005264.1 + 67280 0.7 0.986358
Target:  5'- --uAGACGACG-CGAAUGGGCGGGUAu -3'
miRNA:   3'- cucUUUGUUGUgGUUUGCUCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 22875 0.7 0.988019
Target:  5'- cGAGGGuucGCAGCAUCuc-CGGGCAGGg- -3'
miRNA:   3'- -CUCUU---UGUUGUGGuuuGCUCGUCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.