miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24709 5' -48 NC_005264.1 + 1449 0.66 0.999194
Target:  5'- cGGGAGcCAGCACCGGccaucGCcGGCGGGg- -3'
miRNA:   3'- -CUCUUuGUUGUGGUU-----UGcUCGUCCau -5'
24709 5' -48 NC_005264.1 + 5264 0.68 0.995702
Target:  5'- cGGGAGGCGagucGCgGCCGGACG-GCGGGg- -3'
miRNA:   3'- -CUCUUUGU----UG-UGGUUUGCuCGUCCau -5'
24709 5' -48 NC_005264.1 + 5997 0.67 0.998784
Target:  5'- gGGGAGucguCGGC-CCcGACGGGCGGGg- -3'
miRNA:   3'- -CUCUUu---GUUGuGGuUUGCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 10195 1.08 0.017788
Target:  5'- aGAGAAACAACACCAAACGAGCAGGUAg -3'
miRNA:   3'- -CUCUUUGUUGUGGUUUGCUCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 13345 0.66 0.999194
Target:  5'- aGGGAACGGCGCgAAuCGAGCGGc-- -3'
miRNA:   3'- cUCUUUGUUGUGgUUuGCUCGUCcau -5'
24709 5' -48 NC_005264.1 + 19416 0.68 0.994461
Target:  5'- gGGGAGGCGagGCGCCGGguguggccgcggggcGCGGGUGGGUu -3'
miRNA:   3'- -CUCUUUGU--UGUGGUU---------------UGCUCGUCCAu -5'
24709 5' -48 NC_005264.1 + 19448 0.66 0.998987
Target:  5'- -cGAGGCGcucaucgGCACCAGuauauGCGcGCGGGUAg -3'
miRNA:   3'- cuCUUUGU-------UGUGGUU-----UGCuCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 21532 0.7 0.980311
Target:  5'- -uGGGACAGCACCGGGCGAccGUuuauGGUGu -3'
miRNA:   3'- cuCUUUGUUGUGGUUUGCU--CGu---CCAU- -5'
24709 5' -48 NC_005264.1 + 22875 0.7 0.988019
Target:  5'- cGAGGGuucGCAGCAUCuc-CGGGCAGGg- -3'
miRNA:   3'- -CUCUU---UGUUGUGGuuuGCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 29134 0.72 0.952191
Target:  5'- cAGAGGCAGCACCAgugcgcGgcggcaaggaccgcgGCGAGCAGGc- -3'
miRNA:   3'- cUCUUUGUUGUGGU------U---------------UGCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 33647 0.68 0.995702
Target:  5'- cGAGGGcUGGgACCAAGCGgguGGCGGGUAu -3'
miRNA:   3'- -CUCUUuGUUgUGGUUUGC---UCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 35495 0.7 0.980311
Target:  5'- gGGGAcgacGGCGACGCC--GCGGcGCAGGUGc -3'
miRNA:   3'- -CUCU----UUGUUGUGGuuUGCU-CGUCCAU- -5'
24709 5' -48 NC_005264.1 + 36014 0.67 0.998208
Target:  5'- -cGAGGCGuugccCGCCAAuacucugaGCGAGCGGGa- -3'
miRNA:   3'- cuCUUUGUu----GUGGUU--------UGCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 36248 0.68 0.995702
Target:  5'- -cGGAGCcGCACguGGCGgaAGCGGGUAg -3'
miRNA:   3'- cuCUUUGuUGUGguUUGC--UCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 39127 0.68 0.996354
Target:  5'- uGGAcGCGGCGCCAcucgcccCGAcGCAGGUAu -3'
miRNA:   3'- cUCUuUGUUGUGGUuu-----GCU-CGUCCAU- -5'
24709 5' -48 NC_005264.1 + 44124 0.69 0.989518
Target:  5'- -cGGGAUAGCGgCGAuuACGAGCGGGa- -3'
miRNA:   3'- cuCUUUGUUGUgGUU--UGCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 48066 0.7 0.984527
Target:  5'- cAGGGACAucgGCCGAGCGGcGCAGGg- -3'
miRNA:   3'- cUCUUUGUug-UGGUUUGCU-CGUCCau -5'
24709 5' -48 NC_005264.1 + 51515 0.72 0.950439
Target:  5'- cAGGGugGACugCu--CGAGCAGGUGc -3'
miRNA:   3'- cUCUUugUUGugGuuuGCUCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 52684 0.68 0.996354
Target:  5'- aGAGAuuCGugGCCGAuacCGAGUGGGa- -3'
miRNA:   3'- -CUCUuuGUugUGGUUu--GCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 52858 0.72 0.945873
Target:  5'- ---cGGCAAC-CCGAGCGGGCAGGc- -3'
miRNA:   3'- cucuUUGUUGuGGUUUGCUCGUCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.