miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24709 5' -48 NC_005264.1 + 129222 1.08 0.017788
Target:  5'- aGAGAAACAACACCAAACGAGCAGGUAg -3'
miRNA:   3'- -CUCUUUGUUGUGGUUUGCUCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 95289 0.67 0.998784
Target:  5'- cAGuuACAACACgCAuGCGAGcCAGGa- -3'
miRNA:   3'- cUCuuUGUUGUG-GUuUGCUC-GUCCau -5'
24709 5' -48 NC_005264.1 + 68462 0.66 0.999007
Target:  5'- cGAGGGACGACACCAcuuCGucGGUgAGGUu -3'
miRNA:   3'- -CUCUUUGUUGUGGUuu-GC--UCG-UCCAu -5'
24709 5' -48 NC_005264.1 + 64183 0.66 0.99948
Target:  5'- -----cCAGCACUggGuCGAGCAGGa- -3'
miRNA:   3'- cucuuuGUUGUGGuuU-GCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 68733 0.71 0.975293
Target:  5'- ---cAGCGGCGCCAGAaccuCGGGCGGGUu -3'
miRNA:   3'- cucuUUGUUGUGGUUU----GCUCGUCCAu -5'
24709 5' -48 NC_005264.1 + 21532 0.7 0.980311
Target:  5'- -uGGGACAGCACCGGGCGAccGUuuauGGUGu -3'
miRNA:   3'- cuCUUUGUUGUGGUUUGCU--CGu---CCAU- -5'
24709 5' -48 NC_005264.1 + 48066 0.7 0.984527
Target:  5'- cAGGGACAucgGCCGAGCGGcGCAGGg- -3'
miRNA:   3'- cUCUUUGUug-UGGUUUGCU-CGUCCau -5'
24709 5' -48 NC_005264.1 + 152674 0.69 0.992075
Target:  5'- cGAGGGcUGGgACCAAGCGggGGCGGGUAu -3'
miRNA:   3'- -CUCUUuGUUgUGGUUUGC--UCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 155275 0.68 0.995702
Target:  5'- -cGGAGCcGCACguGGCGgaAGCGGGUAg -3'
miRNA:   3'- cuCUUUGuUGUGguUUGC--UCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 136533 0.67 0.998208
Target:  5'- cGGAGACGACG-CGGACGAagacGCGGGa- -3'
miRNA:   3'- cUCUUUGUUGUgGUUUGCU----CGUCCau -5'
24709 5' -48 NC_005264.1 + 158154 0.68 0.996354
Target:  5'- uGGAcGCGGCGCCAcucgcccCGAcGCAGGUAu -3'
miRNA:   3'- cUCUuUGUUGUGGUuu-----GCU-CGUCCAU- -5'
24709 5' -48 NC_005264.1 + 101852 0.68 0.994957
Target:  5'- --cGAACucCACCGAGC-AGCAGGUAc -3'
miRNA:   3'- cucUUUGuuGUGGUUUGcUCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 52858 0.72 0.945873
Target:  5'- ---cGGCAAC-CCGAGCGGGCAGGc- -3'
miRNA:   3'- cucuUUGUUGuGGUUUGCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 92583 0.67 0.997842
Target:  5'- cAGGuuuuACGCCGAcGCGGGCAGGUu -3'
miRNA:   3'- cUCUuuguUGUGGUU-UGCUCGUCCAu -5'
24709 5' -48 NC_005264.1 + 51515 0.72 0.950439
Target:  5'- cAGGGugGACugCu--CGAGCAGGUGc -3'
miRNA:   3'- cUCUUugUUGugGuuuGCUCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 19416 0.68 0.994461
Target:  5'- gGGGAGGCGagGCGCCGGguguggccgcggggcGCGGGUGGGUu -3'
miRNA:   3'- -CUCUUUGU--UGUGGUU---------------UGCUCGUCCAu -5'
24709 5' -48 NC_005264.1 + 36014 0.67 0.998208
Target:  5'- -cGAGGCGuugccCGCCAAuacucugaGCGAGCGGGa- -3'
miRNA:   3'- cuCUUUGUu----GUGGUU--------UGCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 125024 0.67 0.998784
Target:  5'- gGGGAGucguCGGC-CCcGACGGGCGGGg- -3'
miRNA:   3'- -CUCUUu---GUUGuGGuUUGCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 76443 0.72 0.95474
Target:  5'- uGAGAAACAACACCGucCGccGGCAGa-- -3'
miRNA:   3'- -CUCUUUGUUGUGGUuuGC--UCGUCcau -5'
24709 5' -48 NC_005264.1 + 154522 0.7 0.980311
Target:  5'- gGGGAcgacGGCGACGCC--GCGGcGCAGGUGc -3'
miRNA:   3'- -CUCU----UUGUUGUGGuuUGCU-CGUCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.