miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24720 3' -56.2 NC_005264.1 + 91329 0.66 0.903606
Target:  5'- aGGCGCUGcGGuuggcugugaaGGCUgggucaaUGUACGCAGuCAa -3'
miRNA:   3'- -CCGCGAC-CC-----------UCGG-------AUAUGCGUCuGUa -5'
24720 3' -56.2 NC_005264.1 + 116540 0.66 0.897825
Target:  5'- gGGuCGUUGGGGGCU---ACGgAGGCGg -3'
miRNA:   3'- -CC-GCGACCCUCGGauaUGCgUCUGUa -5'
24720 3' -56.2 NC_005264.1 + 19425 0.66 0.891178
Target:  5'- aGGCGCcGGGuguGGCCgcgggGCGCGGGu-- -3'
miRNA:   3'- -CCGCGaCCC---UCGGaua--UGCGUCUgua -5'
24720 3' -56.2 NC_005264.1 + 51104 0.66 0.8843
Target:  5'- cGGUGCUGcGGucugcucgcGCCUcgACGCuGGCGg -3'
miRNA:   3'- -CCGCGAC-CCu--------CGGAuaUGCGuCUGUa -5'
24720 3' -56.2 NC_005264.1 + 25920 0.66 0.877196
Target:  5'- uGGCG--GGGGGCgCUGUA-GCGGACGa -3'
miRNA:   3'- -CCGCgaCCCUCG-GAUAUgCGUCUGUa -5'
24720 3' -56.2 NC_005264.1 + 116271 0.66 0.86987
Target:  5'- cGCGCgacuUGGaAGCCgugGCGCGGGCGg -3'
miRNA:   3'- cCGCG----ACCcUCGGauaUGCGUCUGUa -5'
24720 3' -56.2 NC_005264.1 + 133398 0.66 0.869125
Target:  5'- cGGCGCagcccguUGGuGGCCccaaagccUACGCGGACAUg -3'
miRNA:   3'- -CCGCG-------ACCcUCGGau------AUGCGUCUGUA- -5'
24720 3' -56.2 NC_005264.1 + 122216 0.67 0.862327
Target:  5'- cGGCGCgGGGAaggGCUUAUuuCGCAGGa-- -3'
miRNA:   3'- -CCGCGaCCCU---CGGAUAu-GCGUCUgua -5'
24720 3' -56.2 NC_005264.1 + 3189 0.67 0.862327
Target:  5'- cGGCGCgGGGAaggGCUUAUuuCGCAGGa-- -3'
miRNA:   3'- -CCGCGaCCCU---CGGAUAu-GCGUCUgua -5'
24720 3' -56.2 NC_005264.1 + 142751 0.67 0.861561
Target:  5'- cGCGCgUGGGAGacauggacaagcUCUacucgcaGUACGCGGACAg -3'
miRNA:   3'- cCGCG-ACCCUC------------GGA-------UAUGCGUCUGUa -5'
24720 3' -56.2 NC_005264.1 + 29609 0.67 0.861561
Target:  5'- cGGCGCUuGGcuucgaaAGCuCUAcgGCGCGGACGa -3'
miRNA:   3'- -CCGCGAcCC-------UCG-GAUa-UGCGUCUGUa -5'
24720 3' -56.2 NC_005264.1 + 61540 0.67 0.849824
Target:  5'- cGCGCUGGGcauagcuggcacgucGGCgCUAagcUACGCAGAa-- -3'
miRNA:   3'- cCGCGACCC---------------UCG-GAU---AUGCGUCUgua -5'
24720 3' -56.2 NC_005264.1 + 102164 0.67 0.838462
Target:  5'- aGGCcUUGGGAGCCcagcUGCGC-GACGa -3'
miRNA:   3'- -CCGcGACCCUCGGau--AUGCGuCUGUa -5'
24720 3' -56.2 NC_005264.1 + 50590 0.67 0.838462
Target:  5'- cGGCGCUGaGcAGCCcg-GCGCuGGACGUu -3'
miRNA:   3'- -CCGCGAC-CcUCGGauaUGCG-UCUGUA- -5'
24720 3' -56.2 NC_005264.1 + 53112 0.67 0.82159
Target:  5'- aGGCGCUcggcgaGGGGGCCgaggagGC-CGGGCAa -3'
miRNA:   3'- -CCGCGA------CCCUCGGaua---UGcGUCUGUa -5'
24720 3' -56.2 NC_005264.1 + 62031 0.68 0.811127
Target:  5'- cGCGCUcuagcaagguucGGAGCCUGcUGCGcCAGGCGUg -3'
miRNA:   3'- cCGCGAc-----------CCUCGGAU-AUGC-GUCUGUA- -5'
24720 3' -56.2 NC_005264.1 + 136359 0.68 0.776501
Target:  5'- gGGCGCUGGGcgcuGCCg--GCGCGaAUAg -3'
miRNA:   3'- -CCGCGACCCu---CGGauaUGCGUcUGUa -5'
24720 3' -56.2 NC_005264.1 + 59802 0.69 0.767054
Target:  5'- -cCGCcGcGGAGCC-GUACGUAGACGUg -3'
miRNA:   3'- ccGCGaC-CCUCGGaUAUGCGUCUGUA- -5'
24720 3' -56.2 NC_005264.1 + 18059 0.69 0.767054
Target:  5'- cGGCGCcGcGAGCCagggcGCGCGGGCAUu -3'
miRNA:   3'- -CCGCGaCcCUCGGaua--UGCGUCUGUA- -5'
24720 3' -56.2 NC_005264.1 + 116426 0.69 0.757485
Target:  5'- aGGuCGCUGGGGGCguCUGgccGCGgGGGCGa -3'
miRNA:   3'- -CC-GCGACCCUCG--GAUa--UGCgUCUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.