miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24723 3' -51.4 NC_005264.1 + 3625 0.66 0.996185
Target:  5'- gCGAGg--GCGgGCGCGCUGAcauucGUCg -3'
miRNA:   3'- gGCUCauaUGCgUGUGCGGCUa----CAGg -5'
24723 3' -51.4 NC_005264.1 + 61457 0.66 0.996185
Target:  5'- gCCGAGUugcucgaGCGCcguucguucuaGCGCGCCGAcGcgCCc -3'
miRNA:   3'- -GGCUCAua-----UGCG-----------UGUGCGGCUaCa-GG- -5'
24723 3' -51.4 NC_005264.1 + 45406 0.66 0.996185
Target:  5'- gCGAacGUGUGCGCcgACgAUGCCaGGUGUUCc -3'
miRNA:   3'- gGCU--CAUAUGCG--UG-UGCGG-CUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 122652 0.66 0.996185
Target:  5'- gCGAGg--GCGgGCGCGCUGAcauucGUCg -3'
miRNA:   3'- gGCUCauaUGCgUGUGCGGCUa----CAGg -5'
24723 3' -51.4 NC_005264.1 + 95104 0.66 0.996185
Target:  5'- gCCGAG-AUACGCGaagGCGCCac-GUCg -3'
miRNA:   3'- -GGCUCaUAUGCGUg--UGCGGcuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 42934 0.66 0.996185
Target:  5'- aCCGAGUAccccaaGCGCuuGUagaUGGUGUCCc -3'
miRNA:   3'- -GGCUCAUaug---CGUGugCG---GCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 22138 0.66 0.99555
Target:  5'- aCGAGcgcgACGCGCgccuuagauuGCGCCGcgGgCCg -3'
miRNA:   3'- gGCUCaua-UGCGUG----------UGCGGCuaCaGG- -5'
24723 3' -51.4 NC_005264.1 + 40663 0.66 0.99555
Target:  5'- gCGAGccuuacUACGCugGCGCCGuucggcGUCg -3'
miRNA:   3'- gGCUCau----AUGCGugUGCGGCua----CAGg -5'
24723 3' -51.4 NC_005264.1 + 141131 0.66 0.99555
Target:  5'- ------cUGCGCGCACGgCCGggGUCa -3'
miRNA:   3'- ggcucauAUGCGUGUGC-GGCuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 5144 0.66 0.99555
Target:  5'- cUCGA---UGCGCGgcCGCGCCGcAUcGUCCg -3'
miRNA:   3'- -GGCUcauAUGCGU--GUGCGGC-UA-CAGG- -5'
24723 3' -51.4 NC_005264.1 + 112975 0.66 0.995343
Target:  5'- aCGcGUAUACGCuGCGCGgcgucaccagggccCCGGUG-CCg -3'
miRNA:   3'- gGCuCAUAUGCG-UGUGC--------------GGCUACaGG- -5'
24723 3' -51.4 NC_005264.1 + 20555 0.66 0.995343
Target:  5'- gCGAG-AUAUGUaucgcgcucugccaGCGCGCgGGUGuUCCa -3'
miRNA:   3'- gGCUCaUAUGCG--------------UGUGCGgCUAC-AGG- -5'
24723 3' -51.4 NC_005264.1 + 111842 0.66 0.995343
Target:  5'- gCGAGUAUcuucCGCAC-CGCUGccggguagcggagcGUGUCUg -3'
miRNA:   3'- gGCUCAUAu---GCGUGuGCGGC--------------UACAGG- -5'
24723 3' -51.4 NC_005264.1 + 29666 0.66 0.994831
Target:  5'- cCCGuGgccagAUGC-CGCGUCGAUcGUCCc -3'
miRNA:   3'- -GGCuCaua--UGCGuGUGCGGCUA-CAGG- -5'
24723 3' -51.4 NC_005264.1 + 33791 0.66 0.994831
Target:  5'- aUCGAGc---CGCGCACGCCGcuuUGgaCCg -3'
miRNA:   3'- -GGCUCauauGCGUGUGCGGCu--ACa-GG- -5'
24723 3' -51.4 NC_005264.1 + 68430 0.66 0.994831
Target:  5'- gCGAuc--GCGCAgucCGCGCCGcgGUCUg -3'
miRNA:   3'- gGCUcauaUGCGU---GUGCGGCuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 63219 0.66 0.994831
Target:  5'- uCCGGGUcuuucCGCAUAacgGCC-AUGUCCa -3'
miRNA:   3'- -GGCUCAuau--GCGUGUg--CGGcUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 45865 0.66 0.994021
Target:  5'- uUCGAGUcUGCGCGC-CGCCaAUG-Ca -3'
miRNA:   3'- -GGCUCAuAUGCGUGuGCGGcUACaGg -5'
24723 3' -51.4 NC_005264.1 + 6766 0.66 0.994021
Target:  5'- aUCGAuGUAUuCGCGCAgCGCCGGcaUGgcuaCCg -3'
miRNA:   3'- -GGCU-CAUAuGCGUGU-GCGGCU--ACa---GG- -5'
24723 3' -51.4 NC_005264.1 + 139149 0.66 0.994021
Target:  5'- gUCG-GUcgGCGUucccGCACGUCGAUGcguaaUCCg -3'
miRNA:   3'- -GGCuCAuaUGCG----UGUGCGGCUAC-----AGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.