Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24723 | 3' | -51.4 | NC_005264.1 | + | 135837 | 1.15 | 0.004241 |
Target: 5'- gCCGAGUAUACGCACACGCCGAUGUCCg -3' miRNA: 3'- -GGCUCAUAUGCGUGUGCGGCUACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 148303 | 0.76 | 0.696175 |
Target: 5'- aCCGcGc--GCGUGCGCGCCGGUGUUCg -3' miRNA: 3'- -GGCuCauaUGCGUGUGCGGCUACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 16491 | 0.75 | 0.76248 |
Target: 5'- aCGAGUcacaugcgucauucgGCGCGCACGCCGAgaGUCa -3' miRNA: 3'- gGCUCAua-------------UGCGUGUGCGGCUa-CAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 21254 | 0.75 | 0.755751 |
Target: 5'- cUCGAGUGUGCGCGC-CGCggaGGUGguaacgCCa -3' miRNA: 3'- -GGCUCAUAUGCGUGuGCGg--CUACa-----GG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 14058 | 0.74 | 0.811341 |
Target: 5'- gCCGGGUGggaACGUGCACGCCaGAcuUCCc -3' miRNA: 3'- -GGCUCAUa--UGCGUGUGCGG-CUacAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 108232 | 0.74 | 0.811341 |
Target: 5'- gCCGAuGUcc-CGCACGCGCCGAgg-CCg -3' miRNA: 3'- -GGCU-CAuauGCGUGUGCGGCUacaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 150987 | 0.74 | 0.828644 |
Target: 5'- gCGAGUGgcgGCG-ACGgGCCGcGUGUCCg -3' miRNA: 3'- gGCUCAUa--UGCgUGUgCGGC-UACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 31960 | 0.74 | 0.828644 |
Target: 5'- gCGAGUGgcgGCG-ACGgGCCGcGUGUCCg -3' miRNA: 3'- gGCUCAUa--UGCgUGUgCGGC-UACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 128638 | 0.73 | 0.837028 |
Target: 5'- gCCaAGUAUGCGCucCAUGCCGcggcugcUGUCCa -3' miRNA: 3'- -GGcUCAUAUGCGu-GUGCGGCu------ACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 16833 | 0.73 | 0.853219 |
Target: 5'- cCCGAGcccauaACGCGCACGCCGuagagGcCCu -3' miRNA: 3'- -GGCUCaua---UGCGUGUGCGGCua---CaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 39268 | 0.73 | 0.868598 |
Target: 5'- cCCGAGacUugGCGCgACGCCGAaGaCCa -3' miRNA: 3'- -GGCUCauAugCGUG-UGCGGCUaCaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 71305 | 0.73 | 0.861014 |
Target: 5'- aCCacAGUGUGCGCaACAcCGCCGAguUGUUCg -3' miRNA: 3'- -GGc-UCAUAUGCG-UGU-GCGGCU--ACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 158295 | 0.73 | 0.868598 |
Target: 5'- cCCGAGacUugGCGCgACGCCGAaGaCCa -3' miRNA: 3'- -GGCUCauAugCGUG-UGCGGCUaCaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 83775 | 0.73 | 0.861014 |
Target: 5'- gUGAGUAUAaccucguaGUACACGCCGuaguUGUCa -3' miRNA: 3'- gGCUCAUAUg-------CGUGUGCGGCu---ACAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 58369 | 0.73 | 0.868598 |
Target: 5'- gCGGGgccgGCGCGauauGCGCCGGauUGUCCa -3' miRNA: 3'- gGCUCaua-UGCGUg---UGCGGCU--ACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 30130 | 0.72 | 0.883114 |
Target: 5'- aCCGAGcugcgGCGCAUugGCCGAgaaacacaacUCCa -3' miRNA: 3'- -GGCUCaua--UGCGUGugCGGCUac--------AGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 69405 | 0.72 | 0.896726 |
Target: 5'- gCGGGUAgGCGCGCcUGCCGccGUCg -3' miRNA: 3'- gGCUCAUaUGCGUGuGCGGCuaCAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 84150 | 0.72 | 0.890035 |
Target: 5'- cCCGGGaagugGUcgcaGCGCGCGCGCCGGaccUGUUUa -3' miRNA: 3'- -GGCUCa----UA----UGCGUGUGCGGCU---ACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 101971 | 0.71 | 0.923348 |
Target: 5'- gCCGAGagacuagaaaaacuuUGccGCGCACGCGCCGAcG-CCg -3' miRNA: 3'- -GGCUC---------------AUa-UGCGUGUGCGGCUaCaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 137121 | 0.71 | 0.931869 |
Target: 5'- aCCGAGU--ACGCAC-CGCUGccGcCCg -3' miRNA: 3'- -GGCUCAuaUGCGUGuGCGGCuaCaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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