miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24723 3' -51.4 NC_005264.1 + 135837 1.15 0.004241
Target:  5'- gCCGAGUAUACGCACACGCCGAUGUCCg -3'
miRNA:   3'- -GGCUCAUAUGCGUGUGCGGCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 148303 0.76 0.696175
Target:  5'- aCCGcGc--GCGUGCGCGCCGGUGUUCg -3'
miRNA:   3'- -GGCuCauaUGCGUGUGCGGCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 21254 0.75 0.755751
Target:  5'- cUCGAGUGUGCGCGC-CGCggaGGUGguaacgCCa -3'
miRNA:   3'- -GGCUCAUAUGCGUGuGCGg--CUACa-----GG- -5'
24723 3' -51.4 NC_005264.1 + 16491 0.75 0.76248
Target:  5'- aCGAGUcacaugcgucauucgGCGCGCACGCCGAgaGUCa -3'
miRNA:   3'- gGCUCAua-------------UGCGUGUGCGGCUa-CAGg -5'
24723 3' -51.4 NC_005264.1 + 108232 0.74 0.811341
Target:  5'- gCCGAuGUcc-CGCACGCGCCGAgg-CCg -3'
miRNA:   3'- -GGCU-CAuauGCGUGUGCGGCUacaGG- -5'
24723 3' -51.4 NC_005264.1 + 14058 0.74 0.811341
Target:  5'- gCCGGGUGggaACGUGCACGCCaGAcuUCCc -3'
miRNA:   3'- -GGCUCAUa--UGCGUGUGCGG-CUacAGG- -5'
24723 3' -51.4 NC_005264.1 + 31960 0.74 0.828644
Target:  5'- gCGAGUGgcgGCG-ACGgGCCGcGUGUCCg -3'
miRNA:   3'- gGCUCAUa--UGCgUGUgCGGC-UACAGG- -5'
24723 3' -51.4 NC_005264.1 + 150987 0.74 0.828644
Target:  5'- gCGAGUGgcgGCG-ACGgGCCGcGUGUCCg -3'
miRNA:   3'- gGCUCAUa--UGCgUGUgCGGC-UACAGG- -5'
24723 3' -51.4 NC_005264.1 + 128638 0.73 0.837028
Target:  5'- gCCaAGUAUGCGCucCAUGCCGcggcugcUGUCCa -3'
miRNA:   3'- -GGcUCAUAUGCGu-GUGCGGCu------ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 16833 0.73 0.853219
Target:  5'- cCCGAGcccauaACGCGCACGCCGuagagGcCCu -3'
miRNA:   3'- -GGCUCaua---UGCGUGUGCGGCua---CaGG- -5'
24723 3' -51.4 NC_005264.1 + 83775 0.73 0.861014
Target:  5'- gUGAGUAUAaccucguaGUACACGCCGuaguUGUCa -3'
miRNA:   3'- gGCUCAUAUg-------CGUGUGCGGCu---ACAGg -5'
24723 3' -51.4 NC_005264.1 + 71305 0.73 0.861014
Target:  5'- aCCacAGUGUGCGCaACAcCGCCGAguUGUUCg -3'
miRNA:   3'- -GGc-UCAUAUGCG-UGU-GCGGCU--ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 58369 0.73 0.868598
Target:  5'- gCGGGgccgGCGCGauauGCGCCGGauUGUCCa -3'
miRNA:   3'- gGCUCaua-UGCGUg---UGCGGCU--ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 158295 0.73 0.868598
Target:  5'- cCCGAGacUugGCGCgACGCCGAaGaCCa -3'
miRNA:   3'- -GGCUCauAugCGUG-UGCGGCUaCaGG- -5'
24723 3' -51.4 NC_005264.1 + 39268 0.73 0.868598
Target:  5'- cCCGAGacUugGCGCgACGCCGAaGaCCa -3'
miRNA:   3'- -GGCUCauAugCGUG-UGCGGCUaCaGG- -5'
24723 3' -51.4 NC_005264.1 + 30130 0.72 0.883114
Target:  5'- aCCGAGcugcgGCGCAUugGCCGAgaaacacaacUCCa -3'
miRNA:   3'- -GGCUCaua--UGCGUGugCGGCUac--------AGG- -5'
24723 3' -51.4 NC_005264.1 + 84150 0.72 0.890035
Target:  5'- cCCGGGaagugGUcgcaGCGCGCGCGCCGGaccUGUUUa -3'
miRNA:   3'- -GGCUCa----UA----UGCGUGUGCGGCU---ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 69405 0.72 0.896726
Target:  5'- gCGGGUAgGCGCGCcUGCCGccGUCg -3'
miRNA:   3'- gGCUCAUaUGCGUGuGCGGCuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 101971 0.71 0.923348
Target:  5'- gCCGAGagacuagaaaaacuuUGccGCGCACGCGCCGAcG-CCg -3'
miRNA:   3'- -GGCUC---------------AUa-UGCGUGUGCGGCUaCaGG- -5'
24723 3' -51.4 NC_005264.1 + 16575 0.71 0.929797
Target:  5'- gCCGGGgcggcgGCGCACAUgacuccgGCCGAcccagaacauugugUGUCCu -3'
miRNA:   3'- -GGCUCaua---UGCGUGUG-------CGGCU--------------ACAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.