Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24723 | 3' | -51.4 | NC_005264.1 | + | 3625 | 0.66 | 0.996185 |
Target: 5'- gCGAGg--GCGgGCGCGCUGAcauucGUCg -3' miRNA: 3'- gGCUCauaUGCgUGUGCGGCUa----CAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 61457 | 0.66 | 0.996185 |
Target: 5'- gCCGAGUugcucgaGCGCcguucguucuaGCGCGCCGAcGcgCCc -3' miRNA: 3'- -GGCUCAua-----UGCG-----------UGUGCGGCUaCa-GG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 45406 | 0.66 | 0.996185 |
Target: 5'- gCGAacGUGUGCGCcgACgAUGCCaGGUGUUCc -3' miRNA: 3'- gGCU--CAUAUGCG--UG-UGCGG-CUACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 122652 | 0.66 | 0.996185 |
Target: 5'- gCGAGg--GCGgGCGCGCUGAcauucGUCg -3' miRNA: 3'- gGCUCauaUGCgUGUGCGGCUa----CAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 95104 | 0.66 | 0.996185 |
Target: 5'- gCCGAG-AUACGCGaagGCGCCac-GUCg -3' miRNA: 3'- -GGCUCaUAUGCGUg--UGCGGcuaCAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 42934 | 0.66 | 0.996185 |
Target: 5'- aCCGAGUAccccaaGCGCuuGUagaUGGUGUCCc -3' miRNA: 3'- -GGCUCAUaug---CGUGugCG---GCUACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 22138 | 0.66 | 0.99555 |
Target: 5'- aCGAGcgcgACGCGCgccuuagauuGCGCCGcgGgCCg -3' miRNA: 3'- gGCUCaua-UGCGUG----------UGCGGCuaCaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 40663 | 0.66 | 0.99555 |
Target: 5'- gCGAGccuuacUACGCugGCGCCGuucggcGUCg -3' miRNA: 3'- gGCUCau----AUGCGugUGCGGCua----CAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 141131 | 0.66 | 0.99555 |
Target: 5'- ------cUGCGCGCACGgCCGggGUCa -3' miRNA: 3'- ggcucauAUGCGUGUGC-GGCuaCAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 5144 | 0.66 | 0.99555 |
Target: 5'- cUCGA---UGCGCGgcCGCGCCGcAUcGUCCg -3' miRNA: 3'- -GGCUcauAUGCGU--GUGCGGC-UA-CAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 112975 | 0.66 | 0.995343 |
Target: 5'- aCGcGUAUACGCuGCGCGgcgucaccagggccCCGGUG-CCg -3' miRNA: 3'- gGCuCAUAUGCG-UGUGC--------------GGCUACaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 20555 | 0.66 | 0.995343 |
Target: 5'- gCGAG-AUAUGUaucgcgcucugccaGCGCGCgGGUGuUCCa -3' miRNA: 3'- gGCUCaUAUGCG--------------UGUGCGgCUAC-AGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 111842 | 0.66 | 0.995343 |
Target: 5'- gCGAGUAUcuucCGCAC-CGCUGccggguagcggagcGUGUCUg -3' miRNA: 3'- gGCUCAUAu---GCGUGuGCGGC--------------UACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 29666 | 0.66 | 0.994831 |
Target: 5'- cCCGuGgccagAUGC-CGCGUCGAUcGUCCc -3' miRNA: 3'- -GGCuCaua--UGCGuGUGCGGCUA-CAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 33791 | 0.66 | 0.994831 |
Target: 5'- aUCGAGc---CGCGCACGCCGcuuUGgaCCg -3' miRNA: 3'- -GGCUCauauGCGUGUGCGGCu--ACa-GG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 68430 | 0.66 | 0.994831 |
Target: 5'- gCGAuc--GCGCAgucCGCGCCGcgGUCUg -3' miRNA: 3'- gGCUcauaUGCGU---GUGCGGCuaCAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 63219 | 0.66 | 0.994831 |
Target: 5'- uCCGGGUcuuucCGCAUAacgGCC-AUGUCCa -3' miRNA: 3'- -GGCUCAuau--GCGUGUg--CGGcUACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 45865 | 0.66 | 0.994021 |
Target: 5'- uUCGAGUcUGCGCGC-CGCCaAUG-Ca -3' miRNA: 3'- -GGCUCAuAUGCGUGuGCGGcUACaGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 6766 | 0.66 | 0.994021 |
Target: 5'- aUCGAuGUAUuCGCGCAgCGCCGGcaUGgcuaCCg -3' miRNA: 3'- -GGCU-CAUAuGCGUGU-GCGGCU--ACa---GG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 139149 | 0.66 | 0.994021 |
Target: 5'- gUCG-GUcgGCGUucccGCACGUCGAUGcguaaUCCg -3' miRNA: 3'- -GGCuCAuaUGCG----UGUGCGGCUAC-----AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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