miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24727 5' -59.7 NC_005264.1 + 137360 1.12 0.001022
Target:  5'- aGCCUCGUUCCCGUACGCCUGGCGCCCc -3'
miRNA:   3'- -CGGAGCAAGGGCAUGCGGACCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 32028 0.77 0.25525
Target:  5'- cGCCUCGggcugCCCcggaGUGCgaGCCaGGCGCCCg -3'
miRNA:   3'- -CGGAGCaa---GGG----CAUG--CGGaCCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 151055 0.77 0.25525
Target:  5'- cGCCUCGggcugCCCcggaGUGCgaGCCaGGCGCCCg -3'
miRNA:   3'- -CGGAGCaa---GGG----CAUG--CGGaCCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 93227 0.75 0.305754
Target:  5'- aGCCugUCGUUCUC--ACGCCgggcGGCGCCCu -3'
miRNA:   3'- -CGG--AGCAAGGGcaUGCGGa---CCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 96272 0.74 0.341032
Target:  5'- aGCCaugacuccaUCGUagacgcgCUCGUGCGCCUcGGCGUCCg -3'
miRNA:   3'- -CGG---------AGCAa------GGGCAUGCGGA-CCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 220 0.72 0.454609
Target:  5'- aGCCcccgaUCGcUUUCCGU--GCCUGGCGCCa -3'
miRNA:   3'- -CGG-----AGC-AAGGGCAugCGGACCGCGGg -5'
24727 5' -59.7 NC_005264.1 + 119247 0.72 0.454609
Target:  5'- aGCCcccgaUCGcUUUCCGU--GCCUGGCGCCa -3'
miRNA:   3'- -CGG-----AGC-AAGGGCAugCGGACCGCGGg -5'
24727 5' -59.7 NC_005264.1 + 124021 0.72 0.463488
Target:  5'- cGUCgUCGUUCUCGUccGCGCCggGGuCGCCg -3'
miRNA:   3'- -CGG-AGCAAGGGCA--UGCGGa-CC-GCGGg -5'
24727 5' -59.7 NC_005264.1 + 71283 0.72 0.463488
Target:  5'- aGCCUCGUgCCCcc-CGCC--GCGCCCg -3'
miRNA:   3'- -CGGAGCAaGGGcauGCGGacCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 4994 0.72 0.463488
Target:  5'- cGUCgUCGUUCUCGUccGCGCCggGGuCGCCg -3'
miRNA:   3'- -CGG-AGCAAGGGCA--UGCGGa-CC-GCGGg -5'
24727 5' -59.7 NC_005264.1 + 154748 0.72 0.481513
Target:  5'- cGCUUCGUugUCCCuGUuuACGCCgcccGUGCCCg -3'
miRNA:   3'- -CGGAGCA--AGGG-CA--UGCGGac--CGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 35722 0.72 0.481513
Target:  5'- cGCUUCGUugUCCCuGUuuACGCCgcccGUGCCCg -3'
miRNA:   3'- -CGGAGCA--AGGG-CA--UGCGGac--CGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 77918 0.71 0.498946
Target:  5'- cGCUUUG-UCCC--GCGCCUGGCucuucccGCCCu -3'
miRNA:   3'- -CGGAGCaAGGGcaUGCGGACCG-------CGGG- -5'
24727 5' -59.7 NC_005264.1 + 58259 0.71 0.527968
Target:  5'- gGCC-CGaUCCCGUgggcggcaugGCGCUUGcGCGCaCCg -3'
miRNA:   3'- -CGGaGCaAGGGCA----------UGCGGAC-CGCG-GG- -5'
24727 5' -59.7 NC_005264.1 + 51558 0.71 0.537466
Target:  5'- cCCUCGUUCUCGUACGCaCcGuuGCCg -3'
miRNA:   3'- cGGAGCAAGGGCAUGCG-GaCcgCGGg -5'
24727 5' -59.7 NC_005264.1 + 38787 0.7 0.547022
Target:  5'- uGCCUCG-UCCCGgugACGUacuccgcGGCGaCCCc -3'
miRNA:   3'- -CGGAGCaAGGGCa--UGCGga-----CCGC-GGG- -5'
24727 5' -59.7 NC_005264.1 + 84863 0.7 0.547022
Target:  5'- cGCC-CGcUCCgGUACGCgC-GGCGCCg -3'
miRNA:   3'- -CGGaGCaAGGgCAUGCG-GaCCGCGGg -5'
24727 5' -59.7 NC_005264.1 + 157813 0.7 0.547022
Target:  5'- uGCCUCG-UCCCGgugACGUacuccgcGGCGaCCCc -3'
miRNA:   3'- -CGGAGCaAGGGCa--UGCGga-----CCGC-GGG- -5'
24727 5' -59.7 NC_005264.1 + 61472 0.7 0.556631
Target:  5'- cGCCguUCGUUCuaGcGCGCCgacGCGCCCc -3'
miRNA:   3'- -CGG--AGCAAGggCaUGCGGac-CGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 3527 0.7 0.556631
Target:  5'- cGCCUCGUcgaaCCGcgACGCggcGGCGUCCa -3'
miRNA:   3'- -CGGAGCAag--GGCa-UGCGga-CCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.