miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24727 5' -59.7 NC_005264.1 + 220 0.72 0.454609
Target:  5'- aGCCcccgaUCGcUUUCCGU--GCCUGGCGCCa -3'
miRNA:   3'- -CGG-----AGC-AAGGGCAugCGGACCGCGGg -5'
24727 5' -59.7 NC_005264.1 + 1395 0.66 0.795283
Target:  5'- cGCgUCGcaUUCCCGUACGaccCCUGGCcgguaaguuaaGCUa -3'
miRNA:   3'- -CGgAGC--AAGGGCAUGC---GGACCG-----------CGGg -5'
24727 5' -59.7 NC_005264.1 + 3454 0.69 0.64457
Target:  5'- cGCCg----CCCGUgGCGCCcGGUGCCg -3'
miRNA:   3'- -CGGagcaaGGGCA-UGCGGaCCGCGGg -5'
24727 5' -59.7 NC_005264.1 + 3527 0.7 0.556631
Target:  5'- cGCCUCGUcgaaCCGcgACGCggcGGCGUCCa -3'
miRNA:   3'- -CGGAGCAag--GGCa-UGCGga-CCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 3556 0.66 0.795283
Target:  5'- cCCUCGUggcgucuuUCCUGgugauCGUgaGGCGUCCu -3'
miRNA:   3'- cGGAGCA--------AGGGCau---GCGgaCCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 4994 0.72 0.463488
Target:  5'- cGUCgUCGUUCUCGUccGCGCCggGGuCGCCg -3'
miRNA:   3'- -CGG-AGCAAGGGCA--UGCGGa-CC-GCGGg -5'
24727 5' -59.7 NC_005264.1 + 6563 0.66 0.81235
Target:  5'- cGCCUCG-UCCaCGgugaUGCGCCccccaGGgGCCg -3'
miRNA:   3'- -CGGAGCaAGG-GC----AUGCGGa----CCgCGGg -5'
24727 5' -59.7 NC_005264.1 + 9760 0.66 0.81235
Target:  5'- aGCCgcCGUgcUCCCaccUACGCuCUGuGCGUCCc -3'
miRNA:   3'- -CGGa-GCA--AGGGc--AUGCG-GAC-CGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 10519 0.66 0.795283
Target:  5'- cGCCgagCGggUCCUGUGCGgCgc-CGCCCu -3'
miRNA:   3'- -CGGa--GCa-AGGGCAUGCgGaccGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 11765 0.67 0.744805
Target:  5'- gGUCUC---UCCGgGCGCCUGGCucgcacuccggggcaGCCCg -3'
miRNA:   3'- -CGGAGcaaGGGCaUGCGGACCG---------------CGGG- -5'
24727 5' -59.7 NC_005264.1 + 12049 0.66 0.795283
Target:  5'- cGCCcgCGaaccaUCCCgGUGCgaGCCaaaGGCGCCCc -3'
miRNA:   3'- -CGGa-GCa----AGGG-CAUG--CGGa--CCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 20880 0.7 0.594513
Target:  5'- uGCCcUGUUUCCGUuaaacaugAgGCCUGGCucgggcgGCCCa -3'
miRNA:   3'- -CGGaGCAAGGGCA--------UgCGGACCG-------CGGG- -5'
24727 5' -59.7 NC_005264.1 + 23376 0.67 0.731684
Target:  5'- gGUC-CGaUCCagacACGCCUGGCcGCCCu -3'
miRNA:   3'- -CGGaGCaAGGgca-UGCGGACCG-CGGG- -5'
24727 5' -59.7 NC_005264.1 + 23413 0.67 0.722216
Target:  5'- gGCCgagcaCgCGUACGCCagcGGUGCCCg -3'
miRNA:   3'- -CGGagcaaGgGCAUGCGGa--CCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 26350 0.66 0.807291
Target:  5'- aCCUUagUCuuGUGCGCCgcggcaggcugcgcGGCGCCg -3'
miRNA:   3'- cGGAGcaAGggCAUGCGGa-------------CCGCGGg -5'
24727 5' -59.7 NC_005264.1 + 28660 0.68 0.673963
Target:  5'- cCCUUGgUCUCGUGCGaCUugucaUGGCGCgCCg -3'
miRNA:   3'- cGGAGCaAGGGCAUGC-GG-----ACCGCG-GG- -5'
24727 5' -59.7 NC_005264.1 + 29681 0.68 0.716499
Target:  5'- cGCgUCGaucgUCCCGgugaugUcaacgaguggguuuuGCGCCUGGUGCUCa -3'
miRNA:   3'- -CGgAGCa---AGGGC------A---------------UGCGGACCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 29694 0.7 0.566288
Target:  5'- aGCCUCGUcaUCCgGU-CGCCUcccGCGCUUa -3'
miRNA:   3'- -CGGAGCA--AGGgCAuGCGGAc--CGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 31404 0.67 0.731684
Target:  5'- uCUUCGUUCCCGUua-CCUGcCGCCg -3'
miRNA:   3'- cGGAGCAAGGGCAugcGGACcGCGGg -5'
24727 5' -59.7 NC_005264.1 + 32028 0.77 0.25525
Target:  5'- cGCCUCGggcugCCCcggaGUGCgaGCCaGGCGCCCg -3'
miRNA:   3'- -CGGAGCaa---GGG----CAUG--CGGaCCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.