miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24727 5' -59.7 NC_005264.1 + 137360 1.12 0.001022
Target:  5'- aGCCUCGUUCCCGUACGCCUGGCGCCCc -3'
miRNA:   3'- -CGGAGCAAGGGCAUGCGGACCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 3454 0.69 0.64457
Target:  5'- cGCCg----CCCGUgGCGCCcGGUGCCg -3'
miRNA:   3'- -CGGagcaaGGGCA-UGCGGaCCGCGGg -5'
24727 5' -59.7 NC_005264.1 + 48364 0.68 0.664187
Target:  5'- gGCCUCGUUgCgcaGUgccGCGUCgaGGCGCUCg -3'
miRNA:   3'- -CGGAGCAAgGg--CA---UGCGGa-CCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 38023 0.66 0.815693
Target:  5'- gGCCUUGUUaCUggguuaGUGCGCCgcuugucaguggaaGGCGCCg -3'
miRNA:   3'- -CGGAGCAA-GGg-----CAUGCGGa-------------CCGCGGg -5'
24727 5' -59.7 NC_005264.1 + 71283 0.72 0.463488
Target:  5'- aGCCUCGUgCCCcc-CGCC--GCGCCCg -3'
miRNA:   3'- -CGGAGCAaGGGcauGCGGacCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 124021 0.72 0.463488
Target:  5'- cGUCgUCGUUCUCGUccGCGCCggGGuCGCCg -3'
miRNA:   3'- -CGG-AGCAAGGGCA--UGCGGa-CC-GCGGg -5'
24727 5' -59.7 NC_005264.1 + 51558 0.71 0.537466
Target:  5'- cCCUCGUUCUCGUACGCaCcGuuGCCg -3'
miRNA:   3'- cGGAGCAAGGGCAUGCG-GaCcgCGGg -5'
24727 5' -59.7 NC_005264.1 + 157813 0.7 0.547022
Target:  5'- uGCCUCG-UCCCGgugACGUacuccgcGGCGaCCCc -3'
miRNA:   3'- -CGGAGCaAGGGCa--UGCGga-----CCGC-GGG- -5'
24727 5' -59.7 NC_005264.1 + 42048 0.7 0.585724
Target:  5'- gGCCUauccaaucgCGUUgCCCGcgGCGCgUGGCGUCa -3'
miRNA:   3'- -CGGA---------GCAA-GGGCa-UGCGgACCGCGGg -5'
24727 5' -59.7 NC_005264.1 + 155759 0.69 0.630813
Target:  5'- aCCUCaGUUCCCcgcagcgcgacgGCGCCggccGGCGCCg -3'
miRNA:   3'- cGGAG-CAAGGGca----------UGCGGa---CCGCGGg -5'
24727 5' -59.7 NC_005264.1 + 61415 0.69 0.615094
Target:  5'- cGCUUCcgggUCUCGUAUGCUUucGGCgGCCCg -3'
miRNA:   3'- -CGGAGca--AGGGCAUGCGGA--CCG-CGGG- -5'
24727 5' -59.7 NC_005264.1 + 122554 0.7 0.556631
Target:  5'- cGCCUCGUcgaaCCGcgACGCggcGGCGUCCa -3'
miRNA:   3'- -CGGAGCAag--GGCa-UGCGga-CCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 151055 0.77 0.25525
Target:  5'- cGCCUCGggcugCCCcggaGUGCgaGCCaGGCGCCCg -3'
miRNA:   3'- -CGGAGCaa---GGG----CAUG--CGGaCCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 62863 0.69 0.615094
Target:  5'- cGCCUCG-UCCacagGCGCUUGGC-CUCg -3'
miRNA:   3'- -CGGAGCaAGGgca-UGCGGACCGcGGG- -5'
24727 5' -59.7 NC_005264.1 + 96272 0.74 0.341032
Target:  5'- aGCCaugacuccaUCGUagacgcgCUCGUGCGCCUcGGCGUCCg -3'
miRNA:   3'- -CGG---------AGCAa------GGGCAUGCGGA-CCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 61472 0.7 0.556631
Target:  5'- cGCCguUCGUUCuaGcGCGCCgacGCGCCCc -3'
miRNA:   3'- -CGG--AGCAAGggCaUGCGGac-CGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 152514 0.69 0.624917
Target:  5'- uCCUCGUUCCgcgcuugcucaGUGCGCgUcgcuGCGCCCg -3'
miRNA:   3'- cGGAGCAAGGg----------CAUGCGgAc---CGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 117172 0.69 0.654387
Target:  5'- cGCCaCGUgcUUCacUGCGCUUGGCGCCUa -3'
miRNA:   3'- -CGGaGCA--AGGgcAUGCGGACCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 119247 0.72 0.454609
Target:  5'- aGCCcccgaUCGcUUUCCGU--GCCUGGCGCCa -3'
miRNA:   3'- -CGG-----AGC-AAGGGCAugCGGACCGCGGg -5'
24727 5' -59.7 NC_005264.1 + 154748 0.72 0.481513
Target:  5'- cGCUUCGUugUCCCuGUuuACGCCgcccGUGCCCg -3'
miRNA:   3'- -CGGAGCA--AGGG-CA--UGCGGac--CGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.