miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24728 3' -50.3 NC_005264.1 + 159940 0.67 0.99058
Target:  5'- uGACAAGGGUggcCCGug-CGGUucGCAGUc -3'
miRNA:   3'- -UUGUUCUCAaa-GGCuaaGCCG--CGUCG- -5'
24728 3' -50.3 NC_005264.1 + 157669 0.71 0.912842
Target:  5'- cGCGAGGGccUCCGAaaggcuucggacgaUgCGGCGCGGCc -3'
miRNA:   3'- uUGUUCUCaaAGGCU--------------AaGCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 157350 0.66 0.99587
Target:  5'- cGACGAGGGUUggcgggcccuggCCGugaugcugggCGGCGgGGCg -3'
miRNA:   3'- -UUGUUCUCAAa-----------GGCuaa-------GCCGCgUCG- -5'
24728 3' -50.3 NC_005264.1 + 156424 0.66 0.996656
Target:  5'- cGCGAGAGUguaCGuggaggaGUUCGGCauggccguggaGCAGCa -3'
miRNA:   3'- uUGUUCUCAaagGC-------UAAGCCG-----------CGUCG- -5'
24728 3' -50.3 NC_005264.1 + 155792 0.66 0.993841
Target:  5'- ---uAGGGauaggUCCGAauucgUGGCGCAGCa -3'
miRNA:   3'- uuguUCUCaa---AGGCUaa---GCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 152818 0.66 0.996711
Target:  5'- uAGCcuGGG-UUCCGAa-CGGCGCGGg -3'
miRNA:   3'- -UUGuuCUCaAAGGCUaaGCCGCGUCg -5'
24728 3' -50.3 NC_005264.1 + 152767 0.72 0.873504
Target:  5'- cGGCGGGAGaUUCCGccgCGGCuGCAGUu -3'
miRNA:   3'- -UUGUUCUCaAAGGCuaaGCCG-CGUCG- -5'
24728 3' -50.3 NC_005264.1 + 150485 0.66 0.993841
Target:  5'- cGACGAGAGcgucgCCGAUg-GGCGUGGa -3'
miRNA:   3'- -UUGUUCUCaaa--GGCUAagCCGCGUCg -5'
24728 3' -50.3 NC_005264.1 + 137867 1.11 0.007335
Target:  5'- aAACAAGAGUUUCCGAUUCGGCGCAGCg -3'
miRNA:   3'- -UUGUUCUCAAAGGCUAAGCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 136340 0.66 0.992875
Target:  5'- cGGCGuAGAag--CUGGUUCGGCGCcGCa -3'
miRNA:   3'- -UUGU-UCUcaaaGGCUAAGCCGCGuCG- -5'
24728 3' -50.3 NC_005264.1 + 136227 0.68 0.982297
Target:  5'- uAACGGGAGgg-CCGAggUGGCGaCGGa -3'
miRNA:   3'- -UUGUUCUCaaaGGCUaaGCCGC-GUCg -5'
24728 3' -50.3 NC_005264.1 + 133425 0.66 0.996711
Target:  5'- uGACAuGAccuccUCCGAUgCGGCGguGCc -3'
miRNA:   3'- -UUGUuCUcaa--AGGCUAaGCCGCguCG- -5'
24728 3' -50.3 NC_005264.1 + 133380 0.77 0.674725
Target:  5'- cGGCGAGAGUcaUCGcggCGGCGCAGCc -3'
miRNA:   3'- -UUGUUCUCAaaGGCuaaGCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 133027 0.66 0.996126
Target:  5'- aGACAGGAagacccUUUCCG---CGGCGguGCg -3'
miRNA:   3'- -UUGUUCUc-----AAAGGCuaaGCCGCguCG- -5'
24728 3' -50.3 NC_005264.1 + 122048 0.69 0.962801
Target:  5'- cGGCAAGcGgcUCCGcucUCGGCGCcGCg -3'
miRNA:   3'- -UUGUUCuCaaAGGCua-AGCCGCGuCG- -5'
24728 3' -50.3 NC_005264.1 + 120643 0.68 0.984283
Target:  5'- uACGGGAcg--CCGGUg-GGCGCGGCu -3'
miRNA:   3'- uUGUUCUcaaaGGCUAagCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 119756 0.67 0.99058
Target:  5'- cGGCAAGGcGgcUCUGG-UCGGCGUAGa -3'
miRNA:   3'- -UUGUUCU-CaaAGGCUaAGCCGCGUCg -5'
24728 3' -50.3 NC_005264.1 + 111959 0.68 0.977769
Target:  5'- uGCAGGAGcg-CCGAgaaguaguagUCGGCGUuaAGCc -3'
miRNA:   3'- uUGUUCUCaaaGGCUa---------AGCCGCG--UCG- -5'
24728 3' -50.3 NC_005264.1 + 110022 0.66 0.996126
Target:  5'- -cCGAGuGUccaaUUCaCGAgauugcagCGGCGCGGCa -3'
miRNA:   3'- uuGUUCuCA----AAG-GCUaa------GCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 103691 0.66 0.993563
Target:  5'- gGGCGAGGGggaagUUGAgggccaguggagcggCGGCGCGGCa -3'
miRNA:   3'- -UUGUUCUCaaa--GGCUaa-------------GCCGCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.