miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 28413 0.74 0.741751
Target:  5'- gGUAUGCGUGuCGCGggGUAGGaccgAACGg -3'
miRNA:   3'- aCGUGCGCGC-GCGCuuUAUCUg---UUGC- -5'
24729 3' -52.1 NC_005264.1 + 54203 0.74 0.741751
Target:  5'- gGUACGauuGCGCGgGGGAUacGGACGGCGg -3'
miRNA:   3'- aCGUGCg--CGCGCgCUUUA--UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 36820 0.74 0.751638
Target:  5'- cGCAgGCgagGCGCgGCGAAgaucGUAGACAGCa -3'
miRNA:   3'- aCGUgCG---CGCG-CGCUU----UAUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 30859 0.73 0.761415
Target:  5'- gGCgGCGCGC-CGCccGGUAGGCAACGg -3'
miRNA:   3'- aCG-UGCGCGcGCGcuUUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 88949 0.73 0.761415
Target:  5'- gGCACGCcUGCuGCGAGAgucGGCGACGg -3'
miRNA:   3'- aCGUGCGcGCG-CGCUUUau-CUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 149885 0.73 0.761415
Target:  5'- gGCgGCGCGC-CGCccGGUAGGCAACGg -3'
miRNA:   3'- aCG-UGCGCGcGCGcuUUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 127110 0.73 0.78999
Target:  5'- gGCACGgGCG-GCGuAAAcagGGACAACGa -3'
miRNA:   3'- aCGUGCgCGCgCGC-UUUa--UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 112286 0.73 0.78999
Target:  5'- cGCACGCGCGCGCc---UAGcuuCGACa -3'
miRNA:   3'- aCGUGCGCGCGCGcuuuAUCu--GUUGc -5'
24729 3' -52.1 NC_005264.1 + 8083 0.73 0.78999
Target:  5'- gGCACGgGCG-GCGuAAAcagGGACAACGa -3'
miRNA:   3'- aCGUGCgCGCgCGC-UUUa--UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 104083 0.73 0.78999
Target:  5'- -cCGCGCGUGCGCcucuGAUAGcGCAGCGg -3'
miRNA:   3'- acGUGCGCGCGCGcu--UUAUC-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 120482 0.73 0.799231
Target:  5'- cGCAuCG-GUGCGCGGAGUAGGUGGCGg -3'
miRNA:   3'- aCGU-GCgCGCGCGCUUUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 49589 0.73 0.799231
Target:  5'- cGCACGC-CGCcgGCGAccaGGACGACGg -3'
miRNA:   3'- aCGUGCGcGCG--CGCUuuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 78687 0.72 0.80651
Target:  5'- gGCGCGCGCGCuGCGAccacuucccgGGGCucGCGa -3'
miRNA:   3'- aCGUGCGCGCG-CGCUuua-------UCUGu-UGC- -5'
24729 3' -52.1 NC_005264.1 + 146081 0.72 0.808314
Target:  5'- aGCGCGCcccCGCGCGGGucuUGGugGACu -3'
miRNA:   3'- aCGUGCGc--GCGCGCUUu--AUCugUUGc -5'
24729 3' -52.1 NC_005264.1 + 50816 0.72 0.808314
Target:  5'- gGCGCGCGCGCagguuuGCGu-GUAGACGugACa -3'
miRNA:   3'- aCGUGCGCGCG------CGCuuUAUCUGU--UGc -5'
24729 3' -52.1 NC_005264.1 + 100197 0.72 0.808314
Target:  5'- cGguCGCGUGCuGCGcu-UGGACGGCGg -3'
miRNA:   3'- aCguGCGCGCG-CGCuuuAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 152980 0.72 0.81723
Target:  5'- uUGCGgucuccgGCGCGgGCGAggaggagaacugGAUAGACGACGa -3'
miRNA:   3'- -ACGUg------CGCGCgCGCU------------UUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 77001 0.72 0.820748
Target:  5'- gUGCGCGCaagacccgguacugaGCGCGCGcuucuuGGUcacAGACAGCGa -3'
miRNA:   3'- -ACGUGCG---------------CGCGCGCu-----UUA---UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 36546 0.72 0.825971
Target:  5'- gGC-CGCGCGCcCGAAAgcGGCAugGc -3'
miRNA:   3'- aCGuGCGCGCGcGCUUUauCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 31839 0.72 0.842892
Target:  5'- cGUGC-CGCGCGCGGca-AGACAugGg -3'
miRNA:   3'- aCGUGcGCGCGCGCUuuaUCUGUugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.