Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24731 | 3' | -58.1 | NC_005264.1 | + | 140637 | 1.06 | 0.002479 |
Target: 5'- aCUCCACUUGCCGCGCACGCCACAGAUg -3' miRNA: 3'- -GAGGUGAACGGCGCGUGCGGUGUCUA- -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 40806 | 0.68 | 0.67737 |
Target: 5'- -gCCGCUUGCCGCGgGguCGCCG-AGAc -3' miRNA: 3'- gaGGUGAACGGCGCgU--GCGGUgUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 33791 | 0.68 | 0.697505 |
Target: 5'- -aUCGa--GCCGCGCACGCCGCuuuGGAc -3' miRNA: 3'- gaGGUgaaCGGCGCGUGCGGUG---UCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 24336 | 0.66 | 0.828324 |
Target: 5'- uCUUCGCgagUGaaauCGCGCGgcaacCGCCGCAGGUa -3' miRNA: 3'- -GAGGUGa--ACg---GCGCGU-----GCGGUGUCUA- -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 122510 | 0.73 | 0.39747 |
Target: 5'- ---gGCUUGCCGcCGCACGCgGCGGGg -3' miRNA: 3'- gaggUGAACGGC-GCGUGCGgUGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 123284 | 0.73 | 0.41461 |
Target: 5'- gUCCcgGCUUGCCGCGCGgGaaCCGCGGGg -3' miRNA: 3'- gAGG--UGAACGGCGCGUgC--GGUGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 123170 | 0.72 | 0.459372 |
Target: 5'- -gCCGCUUGUCGCGaugcuugccgccCACGCCGCGGu- -3' miRNA: 3'- gaGGUGAACGGCGC------------GUGCGGUGUCua -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 88345 | 0.72 | 0.477985 |
Target: 5'- aUCCACcaGCCGCGCA-GCCACguAGAc -3' miRNA: 3'- gAGGUGaaCGGCGCGUgCGGUG--UCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 64514 | 0.7 | 0.555731 |
Target: 5'- -aCCGCgcuguucUGuCCGCGC-CGCCGCGGAg -3' miRNA: 3'- gaGGUGa------AC-GGCGCGuGCGGUGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 141756 | 0.69 | 0.667243 |
Target: 5'- gCUCCACgaUGCCG---ACGCCGCGGAa -3' miRNA: 3'- -GAGGUGa-ACGGCgcgUGCGGUGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 33242 | 0.7 | 0.596021 |
Target: 5'- gCUUCGCc-GCCGCGCcgcaGCGCCuGCAGAg -3' miRNA: 3'- -GAGGUGaaCGGCGCG----UGCGG-UGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 124034 | 0.71 | 0.535874 |
Target: 5'- gUCCGC--GCCGgGguCGCCGCGGAg -3' miRNA: 3'- gAGGUGaaCGGCgCguGCGGUGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 34272 | 0.8 | 0.170467 |
Target: 5'- aUCCGCgUGCUGCGCucCGCCGCGGAa -3' miRNA: 3'- gAGGUGaACGGCGCGu-GCGGUGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 25555 | 0.69 | 0.646913 |
Target: 5'- -cCCGCgucGCCGCcaACGCCGCGGAa -3' miRNA: 3'- gaGGUGaa-CGGCGcgUGCGGUGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 59788 | 0.75 | 0.333635 |
Target: 5'- gUCCACg-GCCGUGUcCGCCGCGGAg -3' miRNA: 3'- gAGGUGaaCGGCGCGuGCGGUGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 59123 | 0.72 | 0.48743 |
Target: 5'- -gCCGCUgaUGCCGCGC-CGCCGCu--- -3' miRNA: 3'- gaGGUGA--ACGGCGCGuGCGGUGucua -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 161294 | 0.69 | 0.657087 |
Target: 5'- -cCCGCcuaUUGCCgGCGCggucaACGCCGCGGGg -3' miRNA: 3'- gaGGUG---AACGG-CGCG-----UGCGGUGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 56313 | 0.68 | 0.68746 |
Target: 5'- aCUCCGCg-GCCGCGC-UGCCGCc--- -3' miRNA: 3'- -GAGGUGaaCGGCGCGuGCGGUGucua -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 131001 | 0.74 | 0.364588 |
Target: 5'- -cCCAuguCUUGCCGCGCGCGgCACGGc- -3' miRNA: 3'- gaGGU---GAACGGCGCGUGCgGUGUCua -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 52800 | 0.72 | 0.441152 |
Target: 5'- -gUCGCUUGCCGCGC-CGCUGCAa-- -3' miRNA: 3'- gaGGUGAACGGCGCGuGCGGUGUcua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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