miRNA display CGI


Results 21 - 40 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 49844 0.75 0.586709
Target:  5'- gCGAgCACGuaCGCCGCAGCCUUcuGg -3'
miRNA:   3'- gGUUgGUGCcgGCGGCGUUGGAAuuC- -5'
24731 5' -54.2 NC_005264.1 + 140864 0.75 0.586709
Target:  5'- aCAGCCgGCGGCCcuaccaauGCCGCGACCa---- -3'
miRNA:   3'- gGUUGG-UGCCGG--------CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 113038 0.74 0.596913
Target:  5'- gCGGCCGCgacugGGCCGCgGCGAUCUUAc- -3'
miRNA:   3'- gGUUGGUG-----CCGGCGgCGUUGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 94673 0.74 0.607142
Target:  5'- gUAGCCGCGGCgggCGCCGCAACgUUc-- -3'
miRNA:   3'- gGUUGGUGCCG---GCGGCGUUGgAAuuc -5'
24731 5' -54.2 NC_005264.1 + 144825 0.74 0.607142
Target:  5'- cCUGACCGCGGCCGacCCGCcGCCg---- -3'
miRNA:   3'- -GGUUGGUGCCGGC--GGCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 112787 0.74 0.617391
Target:  5'- cCCuACCuAUGGCCgucacaguuGCCGCAACCUcGAGg -3'
miRNA:   3'- -GGuUGG-UGCCGG---------CGGCGUUGGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 5936 0.74 0.637913
Target:  5'- uCUAACCACGGCCcgaacCCGCGGCgUUGc- -3'
miRNA:   3'- -GGUUGGUGCCGGc----GGCGUUGgAAUuc -5'
24731 5' -54.2 NC_005264.1 + 7944 0.74 0.637913
Target:  5'- gUCGuCCACGGCCGCgGCGucuuugucgcuGCCUaGAGg -3'
miRNA:   3'- -GGUuGGUGCCGGCGgCGU-----------UGGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 33348 0.73 0.668641
Target:  5'- gCCaAACCcUGcGCCGCCGCAAUCUcGAGu -3'
miRNA:   3'- -GG-UUGGuGC-CGGCGGCGUUGGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 141862 0.73 0.678836
Target:  5'- aCGugCAUGGCUGCCGCGaaaGCCa---- -3'
miRNA:   3'- gGUugGUGCCGGCGGCGU---UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 151417 0.73 0.688992
Target:  5'- gCGGCCgGCGuCCGCCGCGACUUUGu- -3'
miRNA:   3'- gGUUGG-UGCcGGCGGCGUUGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 32790 0.73 0.688992
Target:  5'- gCAGCgACGGUCugGCCGCAACCa---- -3'
miRNA:   3'- gGUUGgUGCCGG--CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 32390 0.73 0.688992
Target:  5'- gCGGCCgGCGuCCGCCGCGACUUUGu- -3'
miRNA:   3'- gGUUGG-UGCcGGCGGCGUUGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 65236 0.73 0.688992
Target:  5'- -gAGCCGuaGCCGCCGCGGCCgaggAAGc -3'
miRNA:   3'- ggUUGGUgcCGGCGGCGUUGGaa--UUC- -5'
24731 5' -54.2 NC_005264.1 + 145933 0.73 0.693042
Target:  5'- gCCAucguCCGCGGCCgacgggaauuucucuGCUGCGACCUUc-- -3'
miRNA:   3'- -GGUu---GGUGCCGG---------------CGGCGUUGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 42016 0.72 0.70815
Target:  5'- gUCGGCCACGGCggcagugucgacgCGCaCGCGGCCUa--- -3'
miRNA:   3'- -GGUUGGUGCCG-------------GCG-GCGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 121201 0.72 0.719139
Target:  5'- cCCGGCCGC-GCUGCCGCAucugGCCa---- -3'
miRNA:   3'- -GGUUGGUGcCGGCGGCGU----UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 62817 0.72 0.72905
Target:  5'- gCAGCaGC-GCCGCCGCGGCCUUc-- -3'
miRNA:   3'- gGUUGgUGcCGGCGGCGUUGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 7640 0.72 0.72905
Target:  5'- cCCAACCACGaaacGCCGCCuGcCGGCUcgGAGg -3'
miRNA:   3'- -GGUUGGUGC----CGGCGG-C-GUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 126667 0.72 0.72905
Target:  5'- cCCAACCACGaaacGCCGCCuGcCGGCUcgGAGg -3'
miRNA:   3'- -GGUUGGUGC----CGGCGG-C-GUUGGaaUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.