Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24733 | 3' | -52.4 | NC_005264.1 | + | 156164 | 0.73 | 0.756928 |
Target: 5'- aGGGcgcauAUGC--GCGGCUuuGCG-GCGUGGCg -3' miRNA: 3'- -CCC-----UACGaaUGCCGA--UGCaCGUACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 155954 | 0.66 | 0.982399 |
Target: 5'- uGGGAcUGC--GCGGCUcGCGgacGCucUGGCu -3' miRNA: 3'- -CCCU-ACGaaUGCCGA-UGCa--CGu-ACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 154610 | 0.7 | 0.905268 |
Target: 5'- gGGGA-GCUgcUGCGGCUuCG-GCcgAUGGCc -3' miRNA: 3'- -CCCUaCGA--AUGCCGAuGCaCG--UACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 150785 | 0.66 | 0.978006 |
Target: 5'- -aGAUGauaUUAUGGggGCGUGUggGGCa -3' miRNA: 3'- ccCUACg--AAUGCCgaUGCACGuaCCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 150052 | 0.69 | 0.926471 |
Target: 5'- uGGGcgacgGUGCcgccuagcggucgUGCGGCUGCGuUGCGgacGGCa -3' miRNA: 3'- -CCC-----UACGa------------AUGCCGAUGC-ACGUa--CCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 146420 | 0.67 | 0.966879 |
Target: 5'- cGGGUGCUgAUGGCU-CGaUGCcgcGGCu -3' miRNA: 3'- cCCUACGAaUGCCGAuGC-ACGua-CCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 145895 | 0.67 | 0.968142 |
Target: 5'- gGGGAUGCUgGCGaGCUggaacagcuccgGCGgcgggucagcgcggGCAUGGg -3' miRNA: 3'- -CCCUACGAaUGC-CGA------------UGCa-------------CGUACCg -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 145783 | 0.68 | 0.960031 |
Target: 5'- aGGGAuggcggucggcaUGCUcuuaGCGGCcGCGcUGC-UGGCg -3' miRNA: 3'- -CCCU------------ACGAa---UGCCGaUGC-ACGuACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 142774 | 0.72 | 0.830463 |
Target: 5'- -cGGUGCUUGCucGCUACGcggggccGCGUGGCg -3' miRNA: 3'- ccCUACGAAUGc-CGAUGCa------CGUACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 141846 | 1.15 | 0.002914 |
Target: 5'- cGGGAUGCUUACGGCUACGUGCAUGGCu -3' miRNA: 3'- -CCCUACGAAUGCCGAUGCACGUACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 125856 | 0.71 | 0.870632 |
Target: 5'- aGGGcUGCUgagucugaaagGCGGgUugGUGCAuuaugUGGCu -3' miRNA: 3'- -CCCuACGAa----------UGCCgAugCACGU-----ACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 125845 | 0.67 | 0.972853 |
Target: 5'- aGGGUGUUgccggagGCGGCgGCGacUAUGGCg -3' miRNA: 3'- cCCUACGAa------UGCCGaUGCacGUACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 125541 | 0.73 | 0.747121 |
Target: 5'- cGGGUGUUgcUGCGGCUGCGgcGCAUaaaccugaaugGGCg -3' miRNA: 3'- cCCUACGA--AUGCCGAUGCa-CGUA-----------CCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 124291 | 0.67 | 0.969972 |
Target: 5'- cGGGAgGCgagucGCGGCcggACG-GCggGGCg -3' miRNA: 3'- -CCCUaCGaa---UGCCGa--UGCaCGuaCCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 117839 | 0.7 | 0.898815 |
Target: 5'- gGGGAgGCgcgGCGGagUGCGcaugcaagGCAUGGCg -3' miRNA: 3'- -CCCUaCGaa-UGCCg-AUGCa-------CGUACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 116292 | 0.7 | 0.911479 |
Target: 5'- ----cGCggGCGGCUACG-GCuGUGGCc -3' miRNA: 3'- cccuaCGaaUGCCGAUGCaCG-UACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 113694 | 0.71 | 0.855186 |
Target: 5'- cGGGGUGCaa--GGCUugG-GCAgaGGCg -3' miRNA: 3'- -CCCUACGaaugCCGAugCaCGUa-CCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 107990 | 0.73 | 0.77619 |
Target: 5'- uGGAUGCggGCGGCUcccaggucACGUcGcCGUGGUg -3' miRNA: 3'- cCCUACGaaUGCCGA--------UGCA-C-GUACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 107392 | 0.67 | 0.966879 |
Target: 5'- aGGGAcGgUUGCGGCUGCu----UGGCa -3' miRNA: 3'- -CCCUaCgAAUGCCGAUGcacguACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 105818 | 0.69 | 0.932308 |
Target: 5'- gGGGAaaUGgUUaugguaucggcggaACGGUUcuCGUGCAUGGCc -3' miRNA: 3'- -CCCU--ACgAA--------------UGCCGAu-GCACGUACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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