miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 5' -55.7 NC_005264.1 + 82384 0.69 0.828386
Target:  5'- -gUGCCGGGCGCAGggcuAGACGUUUG-GAu -3'
miRNA:   3'- ggGCGGCCUGUGUC----UCUGCAGAUgCU- -5'
24734 5' -55.7 NC_005264.1 + 94611 0.69 0.836544
Target:  5'- gCCCGCCGccGGCGCGGAuACGUCa---- -3'
miRNA:   3'- -GGGCGGC--CUGUGUCUcUGCAGaugcu -5'
24734 5' -55.7 NC_005264.1 + 116417 0.69 0.852317
Target:  5'- gCCCGCggcaGGuCGCuGGGGGCGUCUggccGCGGg -3'
miRNA:   3'- -GGGCGg---CCuGUG-UCUCUGCAGA----UGCU- -5'
24734 5' -55.7 NC_005264.1 + 16909 0.69 0.852317
Target:  5'- uCCCGUCGGcCGCGGAcGAUGgcgGCGGc -3'
miRNA:   3'- -GGGCGGCCuGUGUCU-CUGCagaUGCU- -5'
24734 5' -55.7 NC_005264.1 + 58992 0.68 0.867324
Target:  5'- cCCCgGCCGGGCcCAGAagcuuGGCGcUCaGCGAa -3'
miRNA:   3'- -GGG-CGGCCUGuGUCU-----CUGC-AGaUGCU- -5'
24734 5' -55.7 NC_005264.1 + 63012 0.68 0.867324
Target:  5'- gCCGCCGaaGGCACGGAGuCGggggggaaauacUCUACGc -3'
miRNA:   3'- gGGCGGC--CUGUGUCUCuGC------------AGAUGCu -5'
24734 5' -55.7 NC_005264.1 + 132762 0.68 0.867324
Target:  5'- uUCUGuCCGGGCGCGGcGGCGcCgACGAg -3'
miRNA:   3'- -GGGC-GGCCUGUGUCuCUGCaGaUGCU- -5'
24734 5' -55.7 NC_005264.1 + 25598 0.68 0.867324
Target:  5'- gCCGCCGGACG-AGAG-CGgCgagACGAa -3'
miRNA:   3'- gGGCGGCCUGUgUCUCuGCaGa--UGCU- -5'
24734 5' -55.7 NC_005264.1 + 35005 0.68 0.881519
Target:  5'- aCCGCCGGccgcCGCGGAGGCaacgCUGuCGGg -3'
miRNA:   3'- gGGCGGCCu---GUGUCUCUGca--GAU-GCU- -5'
24734 5' -55.7 NC_005264.1 + 159704 0.68 0.8883
Target:  5'- gCCGCCaGGACGauGAcGACGgCUACGAc -3'
miRNA:   3'- gGGCGG-CCUGUguCU-CUGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 40678 0.68 0.8883
Target:  5'- gCCGCCaGGACGauGAcGACGgCUACGAc -3'
miRNA:   3'- gGGCGG-CCUGUguCU-CUGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 57326 0.68 0.8883
Target:  5'- aUCCGCaucgaaaGAUACAGAGGCGUUUagccccGCGAa -3'
miRNA:   3'- -GGGCGgc-----CUGUGUCUCUGCAGA------UGCU- -5'
24734 5' -55.7 NC_005264.1 + 6824 0.68 0.894865
Target:  5'- gUUGCCGGAgGCGGcGGCGaCUAUGGc -3'
miRNA:   3'- gGGCGGCCUgUGUCuCUGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 67624 0.68 0.894865
Target:  5'- uUCGCCacgcGGGCGCAGGGGUGUcCUGCGc -3'
miRNA:   3'- gGGCGG----CCUGUGUCUCUGCA-GAUGCu -5'
24734 5' -55.7 NC_005264.1 + 125850 0.68 0.894865
Target:  5'- gUUGCCGGAgGCGGcGGCGaCUAUGGc -3'
miRNA:   3'- gGGCGGCCUgUGUCuCUGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 67390 0.67 0.901209
Target:  5'- gCCCGCCGG-CGCGGuaGCGUauuccACGAc -3'
miRNA:   3'- -GGGCGGCCuGUGUCucUGCAga---UGCU- -5'
24734 5' -55.7 NC_005264.1 + 155373 0.67 0.90733
Target:  5'- gCCGCacgacguucucCGGACGCGGAG-CGUaacgACGAc -3'
miRNA:   3'- gGGCG-----------GCCUGUGUCUCuGCAga--UGCU- -5'
24734 5' -55.7 NC_005264.1 + 36346 0.67 0.90733
Target:  5'- gCCGCacgacguucucCGGACGCGGAG-CGUaacgACGAc -3'
miRNA:   3'- gGGCG-----------GCCUGUGUCUCuGCAga--UGCU- -5'
24734 5' -55.7 NC_005264.1 + 100218 0.67 0.913225
Target:  5'- cUCCGCgGGGCGCAGuugcucGGaACGUCcGCGc -3'
miRNA:   3'- -GGGCGgCCUGUGUC------UC-UGCAGaUGCu -5'
24734 5' -55.7 NC_005264.1 + 75726 0.67 0.918335
Target:  5'- cCCCG-CGGGCGcCGGAGGCcaGUCUgggugcguuacccGCGAg -3'
miRNA:   3'- -GGGCgGCCUGU-GUCUCUG--CAGA-------------UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.