miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24736 3' -62.7 NC_005264.1 + 99546 0.66 0.664034
Target:  5'- -gUCCgcaUCCCCCGACUgggGCCGguugUCCUCu -3'
miRNA:   3'- auGGG---AGGGGGCUGAga-CGGC----AGGGG- -5'
24736 3' -62.7 NC_005264.1 + 60083 0.66 0.664034
Target:  5'- gGCCCgCCCCUaGCcuaCUGCCGgcggCCCa -3'
miRNA:   3'- aUGGGaGGGGGcUGa--GACGGCa---GGGg -5'
24736 3' -62.7 NC_005264.1 + 142585 0.66 0.664034
Target:  5'- cACCgUCCCCUGAa--UGCCGgCCgCg -3'
miRNA:   3'- aUGGgAGGGGGCUgagACGGCaGGgG- -5'
24736 3' -62.7 NC_005264.1 + 54686 0.66 0.664034
Target:  5'- uUACgCUCCCCgcgaGGCUCgacgGCC--CCCCg -3'
miRNA:   3'- -AUGgGAGGGGg---CUGAGa---CGGcaGGGG- -5'
24736 3' -62.7 NC_005264.1 + 156357 0.66 0.664034
Target:  5'- gGCCCUCgauggccgcgcaCCCCGACguucGCCGcgCCgCCg -3'
miRNA:   3'- aUGGGAG------------GGGGCUGaga-CGGCa-GG-GG- -5'
24736 3' -62.7 NC_005264.1 + 37330 0.66 0.664034
Target:  5'- gGCCCUCgauggccgcgcaCCCCGACguucGCCGcgCCgCCg -3'
miRNA:   3'- aUGGGAG------------GGGGCUGaga-CGGCa-GG-GG- -5'
24736 3' -62.7 NC_005264.1 + 9152 0.66 0.65434
Target:  5'- aGCCCUCCagaGACcc--CCGUCCCCu -3'
miRNA:   3'- aUGGGAGGgggCUGagacGGCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 128179 0.66 0.65434
Target:  5'- aGCCCUCCagaGACcc--CCGUCCCCu -3'
miRNA:   3'- aUGGGAGGgggCUGagacGGCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 56532 0.66 0.63491
Target:  5'- cGCCCUgCCCgCCGcagCUGUCGcUCUCCg -3'
miRNA:   3'- aUGGGA-GGG-GGCugaGACGGC-AGGGG- -5'
24736 3' -62.7 NC_005264.1 + 125749 0.66 0.63491
Target:  5'- cGCCgUCCCCgGAa-CUGCCG-CCgCg -3'
miRNA:   3'- aUGGgAGGGGgCUgaGACGGCaGGgG- -5'
24736 3' -62.7 NC_005264.1 + 118836 0.66 0.63491
Target:  5'- gGCCCa-CCUCGACcCUGCCcaaGUCCgCCu -3'
miRNA:   3'- aUGGGagGGGGCUGaGACGG---CAGG-GG- -5'
24736 3' -62.7 NC_005264.1 + 68323 0.66 0.633938
Target:  5'- cUGCCCUCCCacguggCCGACggCUGCacuaacgcgagcaUGUUCCUg -3'
miRNA:   3'- -AUGGGAGGG------GGCUGa-GACG-------------GCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 114434 0.66 0.615473
Target:  5'- aUGCCC-CCaCCCG-CUCcugGCCGcCgCCCg -3'
miRNA:   3'- -AUGGGaGG-GGGCuGAGa--CGGCaG-GGG- -5'
24736 3' -62.7 NC_005264.1 + 161929 0.67 0.59608
Target:  5'- gACCUUCCCCCcagcggcccgcGACaCgggGCCGUacaCCCa -3'
miRNA:   3'- aUGGGAGGGGG-----------CUGaGa--CGGCAg--GGG- -5'
24736 3' -62.7 NC_005264.1 + 94820 0.67 0.59608
Target:  5'- cACCC-CUCUCGAagaUCUGCCcgacCCCCg -3'
miRNA:   3'- aUGGGaGGGGGCUg--AGACGGca--GGGG- -5'
24736 3' -62.7 NC_005264.1 + 42903 0.67 0.586416
Target:  5'- gACCUUCCCCCcgcggcccgcGACaCgggGCCGUacaCCCa -3'
miRNA:   3'- aUGGGAGGGGG----------CUGaGa--CGGCAg--GGG- -5'
24736 3' -62.7 NC_005264.1 + 159953 0.67 0.576783
Target:  5'- cGCCCUCCCC--GCcgcGCCGcgCCCCg -3'
miRNA:   3'- aUGGGAGGGGgcUGagaCGGCa-GGGG- -5'
24736 3' -62.7 NC_005264.1 + 40926 0.67 0.576783
Target:  5'- cGCCCUCCCC--GCcgcGCCGcgCCCCg -3'
miRNA:   3'- aUGGGAGGGGgcUGagaCGGCa-GGGG- -5'
24736 3' -62.7 NC_005264.1 + 35058 0.67 0.575822
Target:  5'- cGCCuCUCCCCagagaggCGAUUCgGUCcUCCCCg -3'
miRNA:   3'- aUGG-GAGGGG-------GCUGAGaCGGcAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 154085 0.67 0.575822
Target:  5'- cGCCuCUCCCCagagaggCGAUUCgGUCcUCCCCg -3'
miRNA:   3'- aUGG-GAGGGG-------GCUGAGaCGGcAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.